Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g01334 ATGGAGAGCAACACCAACAGCAACAGCGACCGTAACACCGCCAAAGAAGAACACTTGAGTTTGAATCCAGAGGAACACATTGAACAACAAAGTCGAAATAATGATGGAGATGAAGCAACTGAATCGGAGACGGCTCAGCCTCTCGCTCCTCCTTCTCATCAACCTTCAAGAACACCCTTCACTCATCTGAGTCAGGTCGATGCTGACCTTGCCCTCGCTCGAACCCTGCAAGAACAGGAAAGAGCATACATGATGCTGAGAATGAATAATGATGGGAGTGATTATGGAAGTTGGGAAGCTGGAAGCTATTTACATGATGATGATTTTGATGATCCCCATGATGGCATTGACATACATGATGATGATGATGATGATGATGAAGATGAAGATGAAGATGAGGATGAGGATTATGATGAGGAATATGAAGATGAAGATGCATTTGATGTTCATGCTCATGCTCACGCTCACGAAGACGAAGAGGACGAGGATGAAGATGATATAGAGGAACATAATCCTGCTATTGAATTTGATCCAGATGTTTACTCCAGTGATGAAGCTTATGCAAGAGCTCTTCAGGATGCTGAAGAGAGAGAAATGGCTGCTAGAATGCTAGCCCTTGCTGGAATAAATGACAGGAACAACAGGGAGATGGACAATCGTGGTGCTAACTCTCAGGATGCATGGGAGGACGTAGATCCAGACGAACTGTCTTATGAGGAGCTGATTGCATTGGGTGAGGTCGTTGGTTCTGAGAGCAGAGGCCTTTCTGCTGATACCATTGCCACATTGCCTTCAGTAAGCTACACAGCCGGGAGCAATCAAAATGGAAGCAATGATTCATGTGTCATTTGCCGTTTAGATTTTGAAGATGGGGATACCTTGACAGTTCTTTCCTGCAAACATTCGTATCATTCCGAGTGCATAAATAACTGGTTGAAAATTAATAAGGTCTGCCCTGTATGCAGTGCTGAAGTCTCCACATCCAACAATAGCTAG 996 0.4428 MESNTNSNSDRNTAKEEHLSLNPEEHIEQQSRNNDGDEATESETAQPLAPPSHQPSRTPFTHLSQVDADLALARTLQEQERAYMMLRMNNDGSDYGSWEAGSYLHDDDFDDPHDGIDIHDDDDDDDEDEDEDEDEDYDEEYEDEDAFDVHAHAHAHEDEEDEDEDDIEEHNPAIEFDPDVYSSDEAYARALQDAEEREMAARMLALAGINDRNNREMDNRGANSQDAWEDVDPDELSYEELIALGEVVGSESRGLSADTIATLPSVSYTAGSNQNGSNDSCVICRLDFEDGDTLTVLSCKHSYHSECINNWLKINKVCPVCSAEVSTSNNS* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g01334 331 MobiDBLite consensus disorder prediction 89 146 - -
Pte10g01334 331 MobiDBLite consensus disorder prediction 1 65 - -
Pte10g01334 331 FunFam E3 ubiquitin ligase BIG BROTHER-related 247 328 - -
Pte10g01334 331 SUPERFAMILY RING/U-box 275 327 - -
Pte10g01334 331 Pfam Ring finger domain 279 321 IPR001841 -
Pte10g01334 331 MobiDBLite consensus disorder prediction 45 63 - -
Pte10g01334 331 MobiDBLite consensus disorder prediction 11 39 - -
Pte10g01334 331 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 246 328 IPR013083 -
Pte10g01334 331 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED 9 330 IPR043312 -
Pte10g01334 331 SMART ring_2 281 321 IPR001841 -
Pte10g01334 331 ProSiteProfiles Zinc finger RING-type profile. 281 322 IPR001841 -
Pte10g01334 331 MobiDBLite consensus disorder prediction 113 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g01334 Pte-Chr10 31100431 31104865 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g01334 48 212 C3H Transcription Factor Family AT3G19910 52.727 1.22e-36 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g01334 K19045 - cave:132177683 371.318