Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g01319 ATGGCCGAAACGCCGTCATCTCAGGCACAACCACATTCGTCCGAAACCTCTGACTCCCCTCTGTACTGGTGCTACCACTGTGACAAGCGAGTTTCTATTGTCGATCCTACTCAGAATGTCTCTGACATCAAGTGTATGGAGTGCAACTCTGGCTTCGTTGAATCCATATCATCTGCTCCAGCTCCTATGTCTTCTTCATATTTCGAGTCTCCGGATCCTGTGGAAGACCCTAATTTTGGGTCGCAGTTTCTTCGGATACTAAGGATAATCTCGCACGGAGCGCAGATGGGTGGGTGGGACAACGATGACGGTAACGACGAGGAGGAAGGAGAAGGAGAAGAACACGAGCTGGAGGATGTGGATGACAATGAATACCCGCATCGAGATGAAGAGAATCGGCTGGAGATCGAAGGTCGACGCCGCGAACCCCTAGTGGAGCCGGAAGATGAGGAAGATCTGAGAAGAATAAGGCGTGAATTGTTGCGCAGTCGAATCCGAAACTTGGCGATTCGGACCAGAATCGGGAGGAATCGGATGTTAGATTCCGCTGAAGTGTTGATGGGTCTGGAAGATGGTGCAATAGAGTTTACGCTTCAAATGCCGGAATCGGACAGATACATAGGTAACCCGGAGGACTACGTTGACGGGGCGGCGTACGATGCTTTACTTGAGACCTTAGCCGAAAGTGAAGGAGGTGGGACGGAAGGAGCTCCACCGGCGGCGAAGTCGGTTATTTCAGCATTACCGACGGTGGTGATCACTGCGGACGAGGAGGCTGTCGTTTGTGCTGTATGTAAGGACGTGTTGGCTGTTGGAGAAACAGCGAAGAAGTTACCATGCGGGCACTTATACCATGGAATTTGCATCGAGCCATGGTTAGCATCCAAGAACTCATGCCCAGTCTGTCGATTCGAGTTACCAACTGATGACCCCGACTATGAAGAGGGAAAGAGGAAGAAAGTATCGGCCATAGCCAGTGGGGCTTCGGCTTCGGGTCGGTCGGATACAACATCTGGTTGGTGGGAATAA 1029 0.5151 MAETPSSQAQPHSSETSDSPLYWCYHCDKRVSIVDPTQNVSDIKCMECNSGFVESISSAPAPMSSSYFESPDPVEDPNFGSQFLRILRIISHGAQMGGWDNDDGNDEEEGEGEEHELEDVDDNEYPHRDEENRLEIEGRRREPLVEPEDEEDLRRIRRELLRSRIRNLAIRTRIGRNRMLDSAEVLMGLEDGAIEFTLQMPESDRYIGNPEDYVDGAAYDALLETLAESEGGGTEGAPPAAKSVISALPTVVITADEEAVVCAVCKDVLAVGETAKKLPCGHLYHGICIEPWLASKNSCPVCRFELPTDDPDYEEGKRKKVSAIASGASASGRSDTTSGWWE* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g01319 342 FunFam E3 ubiquitin-protein ligase RING1-like 226 309 - -
Pte10g01319 342 Pfam Ring finger domain 262 303 IPR001841 -
Pte10g01319 342 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 229 309 IPR013083 -
Pte10g01319 342 MobiDBLite consensus disorder prediction 95 135 - -
Pte10g01319 342 MobiDBLite consensus disorder prediction 101 125 - -
Pte10g01319 342 SUPERFAMILY RING/U-box 257 310 - -
Pte10g01319 342 ProSiteProfiles Zinc finger RING-type profile. 262 303 IPR001841 -
Pte10g01319 342 Pfam zinc-ribbon 22 56 IPR039525 GO:0061630
Pte10g01319 342 SMART ring_2 262 302 IPR001841 -
Pte10g01319 342 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 138 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g01319 Pte-Chr10 30989094 30990519 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g01319 169 321 C3H Transcription Factor Family AT5G01980 44.516 1.44e-36 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g01319 - - qsa:O6P43_032270 313.153