Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g01299 ATGGCTCAGACAGATTGTATAACTATTAGTTCGTCAGATGATGAAGTGGAGGAGATACCCCACACACGGTCTCTTCCTGCGTGGGCATCTAATGATAGTAGAGCAGGTCATGGTGGGCAGTCTAGGCGGTTCAGTCCTGCAGTCAGGAGCTCATCCAATGTTAATAAACGTGTACCAATAAGACCACATGTTGATCCTGCCTCAAGTGATGTCTTAAGCTGGAATGGTTCGCATGCACACAAATCTTACTCTATAGACAATGCCCAGGTGAATTATCCTCGAAATGTAAATTACCCCACAGCTAATACTTCGGGATCAGACTTCGAGAAACTATCATCTGAACAAGCTTTAAAGAGGACCCTTCCACCATCCATTCAGTCGTCATCTGCAAGGAACCATCATGGTCTTGGAGCTCCTAGCAGCAATATGGGGGATAATGCCAGCAGCAGTCACCTTGATAATTACAGGAACCTTCATGATTTTGGAGGGCCCAGTACCTCAAGTGATAGGAGCTATATGCAGGGTCCTTTTAACAGGGACAATGATGGAAATTTCATGAATCAAAATAGTCGAAGCAGGATTCTGCCTCATTCCTTGAATTACGTGAAGCCTTCATTTAATTCACATTTTGCAAGCATGAGTGATTCTGTCAATCGACCTGGGGTGAATGAAGAAAATGCTGCTGCGAGTGATGAAAGATTGATATATCAGGCAGCACTTGAGGATCTTAATCAACCAAAAGTCGAGGCTTCTTTACCTGAAGGGCTTTTGTCTGTCTCTCTTCTTAGACATCAGAAAATTGCATTAGCTTGGATGCTGCAAAAGGAGAATAGAAGCCTGCATTGTTTGGGTGGAATATTAGCCGATGATCAGGGCCTTGGAAAGACGATCTCTATGATTGCACTCATACAGATGCAGCGGTCATTGCAATCAAACTCAAAATCAGATGTTCATTGTAATCGCAGGGCTGAAGCACTAAATTTGGATGATGATGAAACTGCTGGCAGTGTAAAAATGGAACATGCCAGGAATTCTGCGGAATCAGAGATTTCGGAGCCTGTGCAGGAAGCAAGTAGCTCAAATGGGGCACTGGGTAAGCAGAGACCAGCTGCTGGTACATTGGTTGTCTGCCCAGCTAGTGTTCTAAGACAGTGGGCCAGGGAGCTTGATGATAAAGTTGCAGATCAAGCTAAGCTAAAAGTCCTGATCTATCATGGAGGAACAAGGACAAAGGATCCTGTAGAACTGGCAAAGTATGATGTAGTTCTTACTACATATTCCATTGTCACCAATGAAGTTCCCAAACAACCTTTAATTGATGATGATGAATTGGATGGAAAAGATGTATATGGGTTAACCCCAGAATTCTTTCCTAGCAAAAAGAGGAAAAAGACACATGTCAGTAAGAAGGGTAGGAAAAAAAATGATGGTTCCTCTATTGATTGCTCGAGTGGTCCTCTTGCAAGAGTTGGTTGGTTTCGGGTTATACTTGATGAGGCTCAAACAATAAAGAATCACAGAACTCTGGTGGCTAGAGCTTGCTGTAGCCTACGAGCCAAGAGAAGGTGGTGTTTATCTGGAACACCTATTCAAAACACAATTGATGATTTGTATAGCTACTTTCGGTTTCTAAAGTATGACCCTTATGCAGCATATAAGTCATTTTACAGTACTATTAAGGTTCCAATATCAAGAAATGCAGTTCAGGGTTATAAAAAGCTTCAAGCGGTACTGAGGGCTATAATGATGCGGCGTACCAAAGGAACTGTGATTAACGGAGAGCCTATAATTAAGTTACCTCCAAAAAATATATGCTTGAATAAGGTGGATTTCTCAATGGAGGAGCGAGCCTTCTATGCCAAGTTGGAAGCTGATTCTCGGTCCCAATTCAAGGCTTATGCTGCTGCTGGTACTGTCAATCAAAACTATGCAAATATTCTTTTGATGCTTTTGCGCCTTCGGCAAGCATGCGACCATCCATTTCTCATTAAAGATTGTGATAGTAACTCTGGGGCACATGGGAGACTTTCATCTGAAATGGCTAAGTGCCTTCCAAAGGATATGCTGATTAATCTTTTGAATTGCTTGGAAACATCCTTCGCAATATGCAGCGTTTGTGATGATCCACCAGAGGATCCTGTTGTTACCATGTGTGGCCATGTTTTCTGCTACCAGTGTGTGTCAGATAATATGACTGGGGATGATAATACCTGCCCTGCCCGTGGTTGTAAGGAGCAACTGGGTGAAGATGTTGTTTTCTCCAAAGCTACTTTGAGGAGTTGCATGTCTAATTATCTTGATGGTGGGAGCTCCATTAGTCCTGTTAATGATTATTCAGTAGTACGGCAGAGCGAGTACAGTTCCTCAAAAATTCGAGCGGTTCTTGAGATACTGCACTCTCATAGTAAATTGAAGTGTTCCATGTCTGAACTACATGGTTCCTCAGTGAATGGTGAAAGTAGTTTTTGGGAAGATACTCATGCTGAAGAAAATCGAAGAGATACTTGGTCCGAGTCAAATCAGGAACGACCAGAAAAAGTTATCATTTTCTCACAATGGACCAGTATGTTGGATTTGGTTGAGCTGGCACTGAATCAGGCTTTTATAGAATACAGAAGACTGGATGGTACAATGTCACTGGTTTCGAGAGACAAGGGTGTTAAAGATTTCAACACTGATCCTGAGGTTACGGTCATGCTGATGTCTTTAAAAGCAGGAAATCTTGGGTTGAACATGGTTGCTGCAACTCATGTTATTCTTTTGGATCTTTGGTGGAATCCAACTACTGAAGATCAGGCTGTTGATCGAGCTCATAGAATTGGACAGACTCGTCCTGTCACTGTGACCAGGTTAACTGTTAAAGATACTGTGGAAGATAGAATCTTAGCTCTCCAGGAAGAGAAAAGAAAAATGGTTGCGTCTGCTTTTGGTGAGGAGCATCCTGGGGCATCTGCAACTCGCCTTACAGTGGAAGATCTCAAGTATCTTTTCATGGTATAG 3000 0.426 MAQTDCITISSSDDEVEEIPHTRSLPAWASNDSRAGHGGQSRRFSPAVRSSSNVNKRVPIRPHVDPASSDVLSWNGSHAHKSYSIDNAQVNYPRNVNYPTANTSGSDFEKLSSEQALKRTLPPSIQSSSARNHHGLGAPSSNMGDNASSSHLDNYRNLHDFGGPSTSSDRSYMQGPFNRDNDGNFMNQNSRSRILPHSLNYVKPSFNSHFASMSDSVNRPGVNEENAAASDERLIYQAALEDLNQPKVEASLPEGLLSVSLLRHQKIALAWMLQKENRSLHCLGGILADDQGLGKTISMIALIQMQRSLQSNSKSDVHCNRRAEALNLDDDETAGSVKMEHARNSAESEISEPVQEASSSNGALGKQRPAAGTLVVCPASVLRQWARELDDKVADQAKLKVLIYHGGTRTKDPVELAKYDVVLTTYSIVTNEVPKQPLIDDDELDGKDVYGLTPEFFPSKKRKKTHVSKKGRKKNDGSSIDCSSGPLARVGWFRVILDEAQTIKNHRTLVARACCSLRAKRRWCLSGTPIQNTIDDLYSYFRFLKYDPYAAYKSFYSTIKVPISRNAVQGYKKLQAVLRAIMMRRTKGTVINGEPIIKLPPKNICLNKVDFSMEERAFYAKLEADSRSQFKAYAAAGTVNQNYANILLMLLRLRQACDHPFLIKDCDSNSGAHGRLSSEMAKCLPKDMLINLLNCLETSFAICSVCDDPPEDPVVTMCGHVFCYQCVSDNMTGDDNTCPARGCKEQLGEDVVFSKATLRSCMSNYLDGGSSISPVNDYSVVRQSEYSSSKIRAVLEILHSHSKLKCSMSELHGSSVNGESSFWEDTHAEENRRDTWSESNQERPEKVIIFSQWTSMLDLVELALNQAFIEYRRLDGTMSLVSRDKGVKDFNTDPEVTVMLMSLKAGNLGLNMVAATHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTVKDTVEDRILALQEEKRKMVASAFGEEHPGASATRLTVEDLKYLFMV* 1000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g01299 999 Gene3D - 355 444 IPR038718 -
Pte10g01299 999 MobiDBLite consensus disorder prediction 461 481 - -
Pte10g01299 999 Pfam SNF2-related domain 264 662 IPR000330 GO:0005524|GO:0140658
Pte10g01299 999 SUPERFAMILY RING/U-box 699 764 - -
Pte10g01299 999 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 467 597 - -
Pte10g01299 999 SMART helicmild6 858 941 IPR001650 -
Pte10g01299 999 MobiDBLite consensus disorder prediction 26 57 - -
Pte10g01299 999 MobiDBLite consensus disorder prediction 1 68 - -
Pte10g01299 999 MobiDBLite consensus disorder prediction 324 347 - -
Pte10g01299 999 ProSitePatterns Zinc finger RING-type signature. 718 727 IPR017907 -
Pte10g01299 999 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 677 769 IPR013083 -
Pte10g01299 999 CDD DEXDc_SHPRH-like 261 585 - -
Pte10g01299 999 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 245 585 IPR027417 -
Pte10g01299 999 ProSiteProfiles Zinc finger RING-type profile. 703 739 IPR001841 -
Pte10g01299 999 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 831 994 IPR001650 -
Pte10g01299 999 SMART ultradead3 257 564 IPR014001 -
Pte10g01299 999 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 353 442 - -
Pte10g01299 999 Pfam Zinc finger, C3HC4 type (RING finger) 703 739 - -
Pte10g01299 999 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 70 998 - -
Pte10g01299 999 Gene3D - 600 998 IPR027417 -
Pte10g01299 999 Gene3D - 457 598 IPR038718 -
Pte10g01299 999 Gene3D - 233 321 IPR038718 -
Pte10g01299 999 Pfam Helicase conserved C-terminal domain 840 941 IPR001650 -
Pte10g01299 999 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 276 547 IPR014001 -
Pte10g01299 999 MobiDBLite consensus disorder prediction 324 354 - -
Pte10g01299 999 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 593 998 IPR027417 -
Pte10g01299 999 CDD SF2_C_SNF 838 951 - -
Pte10g01299 999 SMART ring_2 703 741 IPR001841 -
Pte10g01299 999 MobiDBLite consensus disorder prediction 120 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g01299 Pte-Chr10 30756229 30763550 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g01299 102 899 RAD5 or RAD16-like Gene Family AT1G50410 57.143 0.0 872
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pte10g01299 SNF2_N 2.9e-66 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g01299 - - qsa:O6P43_032256 1263.44