Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g01297 ATGGCGGGCGGTGCAAGAGGAAGCACATCTACAAGGTCAAATCCACCCAAGGTCAGAAAACGAGTTGACGCTTCTCCTGATTCAGAAGCCATCGGTCAGACTAACTCCCTCGTTCGTGGCAAAGATGGAAGTGCTTTTGCTAAATGTGGCGAGTGCAATAAGGATGTCCCGGTGGCGCTCATCAGCTTTCATAGTTGTAGCCTCGATGCTAAGATCAAAATGAATCTTGAGGCCCAGGTTGTGGAAAAGCCGGCCGAAGCCAAGAAGCCAGCAGAGAGGAAGAAATCAAAATCTACACAACCCAAAGCCAAGAAGTCCAAACTTATCAAATCCAAGGACAAAGATCCTAACATGCCTAAGCGCCCTCCAACTGCCTTCTTCCTCTTCATGGATGACTTCCGGAAAGAGTACAAGGAAGCACATCCTAACAATAGGGATGTTAAAGCAGTTGCCAAGGAGGGTGGTGAGAAGTGGAAATCCATGTCTGAAGAAGAGAAGAAGGTGTATATGGACAAAGTTGCAGAGCTGAAGGCTGAGTATGAGAAGGCCATGGAGGCCTACACTGCCGAAGATCAAGATGCCAGATCAGAAGGGGAAGGTGTATCTGACAAGGAAGCTCCTGACAATGAAGTTGAAGAAATATCAGATGGGGAGTAA 657 0.4764 MAGGARGSTSTRSNPPKVRKRVDASPDSEAIGQTNSLVRGKDGSAFAKCGECNKDVPVALISFHSCSLDAKIKMNLEAQVVEKPAEAKKPAERKKSKSTQPKAKKSKLIKSKDKDPNMPKRPPTAFFLFMDDFRKEYKEAHPNNRDVKAVAKEGGEKWKSMSEEEKKVYMDKVAELKAEYEKAMEAYTAEDQDARSEGEGVSDKEAPDNEVEEISDGE* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g01297 218 Coils Coil 159 197 - -
Pte10g01297 218 MobiDBLite consensus disorder prediction 1 15 - -
Pte10g01297 218 CDD HMG-box_AtHMGB1-like 120 180 - -
Pte10g01297 218 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 119 188 IPR009071 -
Pte10g01297 218 PANTHER HIGH MOBILITY GROUP B PROTEIN 12-RELATED 17 205 - -
Pte10g01297 218 MobiDBLite consensus disorder prediction 1 36 - -
Pte10g01297 218 Pfam HMG (high mobility group) box 119 187 IPR009071 -
Pte10g01297 218 MobiDBLite consensus disorder prediction 143 162 - -
Pte10g01297 218 Gene3D High mobility group box domain 114 190 IPR036910 -
Pte10g01297 218 MobiDBLite consensus disorder prediction 82 97 - -
Pte10g01297 218 FunFam HMG type nucleosome/chromatin assembly factor 114 183 - -
Pte10g01297 218 SMART hmgende2 118 189 IPR009071 -
Pte10g01297 218 MobiDBLite consensus disorder prediction 82 124 - -
Pte10g01297 218 SUPERFAMILY HMG-box 111 189 IPR036910 -
Pte10g01297 218 MobiDBLite consensus disorder prediction 184 208 - -
Pte10g01297 218 MobiDBLite consensus disorder prediction 184 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g01297 Pte-Chr10 30744650 30746644 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Pte10g01297 HMG_box 5.2e-21 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g01297 K25507 - qsa:O6P43_026184 263.077