Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g01278 ATGGGAAATTGCTGGTGTAGTTGGGAGCCCTCAGTTTACAGAGTCTCAGCCAATGCAAAATCAGCTAAACAGAGGAAGGAAGATTGGAAATTACCATCCACCCCCAAAGAAGTCGAGGATTTACGTTGGGATTTTGCTGCAAATCCATTGATTGTCTTCACCTACGAAGAATTAAAGATAATTACTGGGAACTTTAGGCAAGACCGTGTTTTGGGTGGAGGAGGATTTGGAAGCGTTTATAAAGGTTTTATATCTGATGACGTGAGAGAGGGATTACCTACCCTTACAGTAGCTGTTAAGGTTCATGATGGTGACAATAGTCATCAAGGCCACAGGGAATGGCTGGCAGAAGTTATATTTTTGGGGCAGCTTTCTCATCCAAATTTGGTCAAATTGATCGGATACTGCTGTGAAGATGAGCACCGGGTGCTAATATATAATAAGTACATGGCCCGTGGTAGTGTCGAAAACAATATATTTTCCAGAGTGTTGCTTCCCATATCCTGGTCGATAAGAATGAAGATCGCATTTGGTGCTGCAAAGGGACTTGCCTTTCTACATGCTGTTAAAGTCATCTACCGGGACTTTAAGACGTCTAATATTTTACTGGATCTGGCTTCTGCATTGCAGACTCAACCTGCTTCAGATACTGATATTATCTTGTATTGGGCACTCCCTTTGCTTAAAGAGAAGAAGAAACTGCTAAACATAGTTGATCCAAGGTTACAAGGGGATTACCCCATCAAAGGGGTTCACAAGGCAGCCATGCTAGCCTACCATTGCTTGAATCGCAATCCGAAAGCGAGGCCTTTAATGCGGGACATAGTAGACTCCTTGGAGCCTCTGCAGGAGCAGAGAAGCCTAGACGCGAACGGCCATCTCGATTTGAATGTGCGATATTGCCAACGTTATCAACCAGAAAATGCCTTCGTGCACAAAGTATCTTCTGGCTCTGACATTCAGTCACAGCCATCCGAAGCCGAAAAAGAAGCAAGCAATAATGAAGGTGGACAAGAAGGAGAGCAGCTTTATGAAGAGTATGAAGTAGAAATTGAGCAACCTTATGGGCTCAAATTCGCCAAGGGCAGAGATGGTGGCACTTACATTGATGCCATTGCACCTGGTGGATCAGCAGACAAGACTGGCAAGTTCACTGTTGGGGATAAAGTAATTGCCACCAGGTTCTCCTTCTTTTCGTTCTTTCTGTGCCAATGA 1215 0.4428 MGNCWCSWEPSVYRVSANAKSAKQRKEDWKLPSTPKEVEDLRWDFAANPLIVFTYEELKIITGNFRQDRVLGGGGFGSVYKGFISDDVREGLPTLTVAVKVHDGDNSHQGHREWLAEVIFLGQLSHPNLVKLIGYCCEDEHRVLIYNKYMARGSVENNIFSRVLLPISWSIRMKIAFGAAKGLAFLHAVKVIYRDFKTSNILLDLASALQTQPASDTDIILYWALPLLKEKKKLLNIVDPRLQGDYPIKGVHKAAMLAYHCLNRNPKARPLMRDIVDSLEPLQEQRSLDANGHLDLNVRYCQRYQPENAFVHKVSSGSDIQSQPSEAEKEASNNEGGQEGEQLYEEYEVEIEQPYGLKFAKGRDGGTYIDAIAPGGSADKTGKFTVGDKVIATRFSFFSFFLCQ* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g01278 404 SUPERFAMILY Protein kinase-like (PK-like) 48 283 IPR011009 -
Pte10g01278 404 Gene3D Transferase(Phosphotransferase) domain 1 209 301 - -
Pte10g01278 404 Gene3D Transferase(Phosphotransferase) domain 1 150 208 - -
Pte10g01278 404 ProSiteProfiles PDZ domain profile. 355 392 IPR001478 GO:0005515
Pte10g01278 404 MobiDBLite consensus disorder prediction 315 339 - -
Pte10g01278 404 FunFam Serine/threonine-protein kinase BIK1 32 148 - -
Pte10g01278 404 ProSitePatterns Serine/Threonine protein kinases active-site signature. 191 203 IPR008271 GO:0004672|GO:0006468
Pte10g01278 404 SUPERFAMILY PDZ domain-like 345 391 IPR036034 GO:0005515
Pte10g01278 404 Pfam Protein tyrosine and serine/threonine kinase 67 204 IPR001245 GO:0004672|GO:0006468
Pte10g01278 404 Gene3D Phosphorylase Kinase; domain 1 28 147 - -
Pte10g01278 404 MobiDBLite consensus disorder prediction 315 340 - -
Pte10g01278 404 ProSitePatterns Protein kinases ATP-binding region signature. 71 100 IPR017441 GO:0005524
Pte10g01278 404 Gene3D - 338 394 IPR036034 GO:0005515
Pte10g01278 404 ProSiteProfiles Protein kinase domain profile. 65 404 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte10g01278 404 PANTHER OS01G0588500 PROTEIN-RELATED 215 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g01278 Pte-Chr10 30610882 30615998 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g01278 52 204 Receptor kinase-like Gene Family AT5G56890 48.101 2.57e-35 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Pte10g01278 PK_Tyr_Ser-Thr 6.6e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g01278 - - jre:109003631 344.354