Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g01262 ATGATGAGGGGGCCATCAACTAGAGTACCTTCATCTACAAGCAGCAACAGCACCCCATGCAGCAGCGAAGAGTTAGGGTTGAAGAGAGGGCCATGGACACCAGAGGAAGATGAACTCTTAGCTAACTACATCCACCGTGAAGGAGAAGGCCGATGGCGAACCCTACCCAAGCGTGCAGGGCTGCTACGCTGTGGCAAGAGCTGTCGTCTTCGGTGGATGAACTATCTCCGCCCTTGTCTCAAGCATGGTCAGATCACCCCTGATGAAGAAGATCTCATCCTTCGCCTTCACCGTCTTCTGGGAAACCGGTGGTCTTTGATAGCTGGCAGAATTCCAGGGCGTACGGACAATGAGATAAAGAACTATTGGAACACACACATGAGCAAGAAGCTCATCAGCCAAGGGCTAGATCCCCGAACCCACAAGCCTTTAGTGAGTTTGAGTCATCCCGATCATTCTCATGCAACTACTACTCCCACCACCACTAATAATGATCCACATGATCATGATGAAGATCTTGCGAGGGATGCAGCAGCTACAGCTTCTTTGATCCAACATCAACTGCATGAACCCCACCAGCCTTCTGCAGTTTGCATTACCAAGCCTTCAGACGATCATAATACTTGGCATATCCCTGTTGTTAACAAGGACCAAAAAGGGTATTTGGATCTATATGAAAATAATGGAGATGGTAATCTGGAGGTGCTCTTTGATGGCGATGAATCTGGTGCATTAACAACCGGGAATATCAGTAATGACATGGAGCACCTTGTCGGTTCTGATATTGGAGGAATTTTACATGTCGATGATGAAGATCACTTGAGTTATAACTCATGTTATGATGATGTGTTCTCTTCTTTCCTTAATTCTTTGACAGAGGAGGATAGTTTTTTCCATCATACACCGACAAGATGA 915 0.4645 MMRGPSTRVPSSTSSNSTPCSSEELGLKRGPWTPEEDELLANYIHREGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPCLKHGQITPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHMSKKLISQGLDPRTHKPLVSLSHPDHSHATTTPTTTNNDPHDHDEDLARDAAATASLIQHQLHEPHQPSAVCITKPSDDHNTWHIPVVNKDQKGYLDLYENNGDGNLEVLFDGDESGALTTGNISNDMEHLVGSDIGGILHVDDEDHLSYNSCYDDVFSSFLNSLTEEDSFFHHTPTR* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g01262 304 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 27 76 IPR017930 -
Pte10g01262 304 SUPERFAMILY Homeodomain-like 26 123 IPR009057 -
Pte10g01262 304 MobiDBLite consensus disorder prediction 1 32 - -
Pte10g01262 304 Gene3D - 26 82 - -
Pte10g01262 304 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 77 131 IPR017930 -
Pte10g01262 304 CDD SANT 31 76 IPR001005 -
Pte10g01262 304 ProSiteProfiles Myb-like domain profile. 24 76 IPR001005 -
Pte10g01262 304 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 18 179 - -
Pte10g01262 304 Pfam Myb-like DNA-binding domain 29 76 IPR001005 -
Pte10g01262 304 Pfam Myb-like DNA-binding domain 83 126 IPR001005 -
Pte10g01262 304 MobiDBLite consensus disorder prediction 140 171 - -
Pte10g01262 304 SMART sant 81 129 IPR001005 -
Pte10g01262 304 SMART sant 28 78 IPR001005 -
Pte10g01262 304 FunFam Myb transcription factor 26 82 - -
Pte10g01262 304 ProSiteProfiles Myb-like domain profile. 77 127 IPR001005 -
Pte10g01262 304 MobiDBLite consensus disorder prediction 1 23 - -
Pte10g01262 304 Gene3D - 84 154 - -
Pte10g01262 304 FunFam transcription repressor MYB5-like 86 153 - -
Pte10g01262 304 CDD SANT 86 127 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g01262 Pte-Chr10 30450665 30452033 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g01262 13 144 MYB Transcription Factor Family AT3G13540 78.030 1.56e-74 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte10g01262 Myb_DNA-binding 2.8e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g01262 K09422 - jre:108982488 280.796