Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g01254 ATGAATCAAGCATCATGGGCAGATCTGGCTGCCAATTCAGCAGCTGATAACTCAGGTACCGGTTCTTCTGCCAATAATGGGACTGCAGGAAAAGCTCCTACACGGCCTGCATATGTTCCTCCACACCTAAGAAACCGTCCAACAACTGCGGAGACTGCCCCAGTGCCATCATATAGTGGGGGTGGTCCTCCTTCTGGCACGGGAAATACTGGATCACGTTGGCCAGGCCCCAGAAATGACTATAGATCAGGGTATGGCGGCGGTGGCGGGCGTGCTGGTGGATGGGGAAGCAGAACTGGTGGTTGGGACCGAGGTAGAGAGCGGGAGGTGAATCCTTTTGGCGATGATGACGATTCTGAGCCAGCATTTGTGGAGCAGGAGAATAGTGGAATTAATTTTGATGCATACGAAGACATTCCAGTTGAGACCAGCGGGGATAACGTGGCACCACCCGTGAATACATTTGCTGAAATTGATCTTGGTGAAGCACTTAACCAGAATATAAGAAGGTGCAAATATGTAAAGCCAACACCTGTTCAGCGGCATGCCATTCCTATTTCTATTTCGGGGCGAGATTTGATGGCTTGTGCTCAGACTGGCTCTGGAAAGACGGCTGCTTTCTGCTTTCCTATAATCAGTGGAATCATGAAAGGGGAACCTGTAAAGAGACCTCCTCGTGGGGCACGCACTGTGTACCCGTTGGCTCTAATTCTCTCACCAACCAGGGAGTTGTCGATGCAAATTCATGAGGAAGCTAGAAAGTTTTCATACCAGACAGGCGTTAGGGTGGTTGTTGCGTATGGTGGAGCAGCAATACAACATCAGTTACGGGAGCTTGAGAGAGGTGTTGATATTCTCGTTGCAACACCTGGAAGGTTAGTAGACTTACTGGAGAGAGCAAAAGTTTCATTACAGATGATTAGGTATTTGGCTCTTGATGAGGCAGATAGGATGCTGGATATGGGTTTTGAGCCTCAGATAAGGAAAATTGTGGAGCAATGTGACATGCCTCCTCCAGGTATGAGACAGACCATGCTATTCAGTGCCACTTTTCCGAAGGAAATACAGAGATTGGCATCTGATTTTCTTTCCAATTATATATTTTTGGCTGTTGGACGGGTGGGCTCAAGTACTGATCTGATTGTCCAAAGAGTTGAGTTTGTTCATGAGTCTGACAAGAGAAGTCACCTCATGGACCTTCTTCATGCACAAAAGTCTAATGATGTACAGGGGAAGCAAGCTCTGACATTGGTTTTTGTCGAGACAAAAAAGGGAGCTGATTCACTGGAGCACTTTTTATGTCTCAATGGTTTTCCTGCCACTACTATCCATGGTGACAGGAGTCAGCAGGAAAGAGAACTAGCACTGAGGTCATTCAAAAGTGGCAATACGCCTATATTGGTTGCAACTGATGTTGCTGCTCGTGGTCTTGACATACCACATGTCGCTCAGGTTGTTAATTTTGATCTGCCCAACGATATTGATGACTATGTGCATCGAATTGGAAGGACAGGACGAGCTGGAAATACTGGTCTCGCTACTGCATTTTTCAATGAGAACAATGCCTCACTTGCGAGACCTTTGGCAGATCTGATGCAAGAAGCAAATCAAGAAGTACCTGCTTGGCTATCTCGCTATGCAGCTCGATCTTCTTTTGGAGGAAGGAACAAGCGTTCGGGTGGAGGGCGATTCGGTGGCCGCGACTTTAGGAGGGAGGGTTCCTACAACAGGGGTGGATCTGATTATTATGGTGCAGGCAATAGCAGCAGCAGTTATGGCGCTTCTGGTGGTTACAGTGGAGGGTATGGTCCTGGAGTGGCCAGTGCCTGGGATTGA 1836 0.4788 MNQASWADLAANSAADNSGTGSSANNGTAGKAPTRPAYVPPHLRNRPTTAETAPVPSYSGGGPPSGTGNTGSRWPGPRNDYRSGYGGGGGRAGGWGSRTGGWDRGREREVNPFGDDDDSEPAFVEQENSGINFDAYEDIPVETSGDNVAPPVNTFAEIDLGEALNQNIRRCKYVKPTPVQRHAIPISISGRDLMACAQTGSGKTAAFCFPIISGIMKGEPVKRPPRGARTVYPLALILSPTRELSMQIHEEARKFSYQTGVRVVVAYGGAAIQHQLRELERGVDILVATPGRLVDLLERAKVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQCDMPPPGMRQTMLFSATFPKEIQRLASDFLSNYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQKSNDVQGKQALTLVFVETKKGADSLEHFLCLNGFPATTIHGDRSQQERELALRSFKSGNTPILVATDVAARGLDIPHVAQVVNFDLPNDIDDYVHRIGRTGRAGNTGLATAFFNENNASLARPLADLMQEANQEVPAWLSRYAARSSFGGRNKRSGGGRFGGRDFRREGSYNRGGSDYYGAGNSSSSYGASGGYSGGYGPGVASAWD* 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g01254 611 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 153 181 IPR014014 GO:0003724
Pte10g01254 611 FunFam ATP-dependent RNA helicase RhlB 372 551 - -
Pte10g01254 611 Pfam DEAD/DEAH box helicase 177 358 IPR011545 GO:0003676|GO:0005524
Pte10g01254 611 MobiDBLite consensus disorder prediction 101 115 - -
Pte10g01254 611 FunFam Probable ATP-dependent RNA helicase DDX4 116 371 - -
Pte10g01254 611 Gene3D - 110 371 IPR027417 -
Pte10g01254 611 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 126 547 - -
Pte10g01254 611 Pfam Helicase conserved C-terminal domain 392 508 IPR001650 -
Pte10g01254 611 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 234 523 IPR027417 -
Pte10g01254 611 CDD DEADc_DDX3_DDX4 154 375 IPR044763 GO:0003724|GO:0005524
Pte10g01254 611 Gene3D - 372 551 IPR027417 -
Pte10g01254 611 MobiDBLite consensus disorder prediction 62 76 - -
Pte10g01254 611 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 184 369 IPR014001 -
Pte10g01254 611 MobiDBLite consensus disorder prediction 1 122 - -
Pte10g01254 611 SMART ultradead3 172 384 IPR014001 -
Pte10g01254 611 SMART helicmild6 427 508 IPR001650 -
Pte10g01254 611 CDD SF2_C_DEAD 381 517 - -
Pte10g01254 611 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 396 547 IPR001650 -
Pte10g01254 611 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g01254 Pte-Chr10 30398918 30405044 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g01254 151 540 Eukaryotic Initiation Factors Gene Family AT3G19760 31.458 9.08e-60 203
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g01254 K11594 - gmx:100795756 948.347