Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g01241 ATGAGGGGAAGGAGTTATACTCCATCACCGCCCAGAGGTTACGGTAGAAGAGGACGGAGTCCTAGCCCAAGAGGCCGATACGGTGGTGGTCGTGGCAGAGATCTCCCCACTAGTCTTCTGGTTCGCAACCTTCGCCATGATTGTAGACCAGAAGACCTACGCAGGCCGTTTGGCCAATTTGGTCCTCTGAAGGACATCTACTTACCGAGGGATTATTATACCGGGCAACCTCGTGGATTCGGTTTTGTTCAATTTGTAGAACCTGCTGATGCTGCTGAAGCGAAGTATCAGATGGATGGTCAGATACTTTTTGGACGGGAGTTGACTGTTGTATTTGCGGAGGAGAATAGGAAAAAGCCAACTGAGATGAGGGCAAGGGAGCGAAGAGGCCTGTCTGATGACAGAAGGAGATCTCCGCCTCGCTATTCTCGCTCACCTCGTCACTCCCGCTACTCTCGCTCACCACCTCATCGTAGGTCTCACTTAAGGAGCCATGATGATTATCCCTCAGCAGCCAAACGAGGGCAACATTCAAGATCTGTTTCTCCTCAAGAGAGAAGGTACATGCGGGAGAGGTCATACTCACCTCAAGCTCGAGAAAGGTCTTACTCTCGTTCTCCACCCTACAGTGGATCAAGAAGCCGCAGTCAAAGTCCAATTAAGGGCCCTCCCATAAGCAGAAGCCCCAGCCCCCGGCACGTTGATTACTCCAGGGACGCTGCCCGCAGTGGATCCGGAGGTCAGTGA 747 0.5261 MRGRSYTPSPPRGYGRRGRSPSPRGRYGGGRGRDLPTSLLVRNLRHDCRPEDLRRPFGQFGPLKDIYLPRDYYTGQPRGFGFVQFVEPADAAEAKYQMDGQILFGRELTVVFAEENRKKPTEMRARERRGLSDDRRRSPPRYSRSPRHSRYSRSPPHRRSHLRSHDDYPSAAKRGQHSRSVSPQERRYMRERSYSPQARERSYSRSPPYSGSRSRSQSPIKGPPISRSPSPRHVDYSRDAARSGSGGQ* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g01241 248 SUPERFAMILY RNA-binding domain, RBD 37 142 IPR035979 GO:0003676
Pte10g01241 248 SMART rrm1_1 38 111 IPR000504 GO:0003723
Pte10g01241 248 MobiDBLite consensus disorder prediction 1 36 - -
Pte10g01241 248 Gene3D - 30 214 IPR012677 -
Pte10g01241 248 MobiDBLite consensus disorder prediction 141 159 - -
Pte10g01241 248 MobiDBLite consensus disorder prediction 199 223 - -
Pte10g01241 248 MobiDBLite consensus disorder prediction 117 140 - -
Pte10g01241 248 MobiDBLite consensus disorder prediction 117 248 - -
Pte10g01241 248 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 37 115 IPR000504 GO:0003723
Pte10g01241 248 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 36 232 - -
Pte10g01241 248 MobiDBLite consensus disorder prediction 160 198 - -
Pte10g01241 248 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 39 108 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g01241 Pte-Chr10 30312790 30315925 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g01241 37 145 Eukaryotic Initiation Factors Gene Family AT4G34110 29.730 5.62e-10 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g01241 K12900 - vvi:100263951 259.996