Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g01235 ATGGTCGTTCTTACTAATTTGATTTCAGAAGGTGAGCGTTCTGGAACCATGGTACAATCTAGCTATGTTCAAATTGACTCAAGAAGTGGTTTCTGCAAATCGAACTCTGTCTTCTACAGCAAGCGCAGACCAGTCCCACTCCCACCAAACCGATGTTTGGATGTGACGACATTCATATCGTCGCAAGCTCACCAGGGCAAGATTGCTTTCATTGATGCCGCCAGCGGAAACAGCCTCACCTTCTTTGAACTCTGGCAAGCCGTTGAGGCCGTTTCTTCATGTCTCTCACAAATGGGGATCAGAAAAGGCTATGTTGTCCTTTTGCTTTCTCCAAACTCCATCTACTTTCCCATTGTCTGCTTGGCAGTCATGTCCCTTGGAGCTATCATCACCACTGCAAATCCACTCAACACAAACAATGAAATTGCTAAGCAAGTGGCCGATTCAAAACCTGCCCTGGCTTTCACTACTCCCGAACTCATCTGTAAGCTTACTGGGTCAACCGGTCTCCCAATTGTTCTCATAGACAATGAAGAACAGTATCGAACTGGAGGAAACTCAAAGGTCAATGTTGCAACGACATTGAAGGAAATGATGACAAAAAAACCTAGTGGAAGCAGAATAAGAGAGAGAATTACTCAGGACGACACTGCAAGTCTGTTGTATTCTTCAGGCACAACTGGTGCCAGCAAAGGAGTTGTGTCTTCTCATGGAAACCTCATTGCTATGGTACAAACTATCGTAGGTCGTTTTTTTGTGGGTGAAGGATTACAGACATTTATCTGTACAGTTCCCATGTTTCACATATATGGTTTGGCAGCTTTTGCAACTGGTTTATTAGCAGCAGGCTCAACAATTGTGGTACTATCAAAATTTGAGATACATGAAATGTTTGCAGCTATTGAAAAGTACAAAGCAACATATCTTCCACTTGTGCCTCCAATTTTGGTTGCAATGGTGAATAATGCAAATCAGATAAAGGCCAAGTATGATTTGAGTTCTTTGCATTCGATTTTGTCAGGTGGCGCACCACTTAGTAAGGAGGTGATAGAGGGAGTTGTAGAGAGGTATCCACAGGTGAGGATTCTACAAGGCTATGGATTGACTGAATCAACTGCAATTGGGGCTTCAACTGACACATTGGAAGAGAGTAGGAGGTATGGGACTGCAGGACTGTTGTCACCAAATATGGAGGCAAAGATCGTTGATCCAGAAAGTGGGGAGGCTTTGCCTGTCAATAAGACTGGTGAGCTTTGGCTGAGGGGTCCGAGTGTAATGAAAGGTTACTTTAGCAACGAGGAAGCAACTGCATCCACTCTTAGTCCGGAGGGATGGCTTAAAACAGGAGACCTTTGCTACATAGACGATGATGGACATATTTTTGTTGTTGATAGATTGAAAGAACTGATCAAATACAAGGGTTATCAGGTACCTCCTGCAGAGCTGGAGGCCCTATTGCTGACTCATCCACAAATTGCTGATGCTGCTGTTATACCCTTTCCAGATAAGGAGGTGGGGCAGTTTCCAATGGCATACATTGTGAGAAAGGCAGGAAGTGATATATCAGAGACTACCGTGATGGAATTTGTGGCAAAACAGGTGGCTCCCTACAAGAGAATCCGAAGAGTGTCCTTTGTGAGTTCAATTCCCAAGAATGCATCCGGCAAGATACTAAGGAAAGATCTTATCAAACTTGCTACGTCGAAACTTTGA 1713 0.4396 MVVLTNLISEGERSGTMVQSSYVQIDSRSGFCKSNSVFYSKRRPVPLPPNRCLDVTTFISSQAHQGKIAFIDAASGNSLTFFELWQAVEAVSSCLSQMGIRKGYVVLLLSPNSIYFPIVCLAVMSLGAIITTANPLNTNNEIAKQVADSKPALAFTTPELICKLTGSTGLPIVLIDNEEQYRTGGNSKVNVATTLKEMMTKKPSGSRIRERITQDDTASLLYSSGTTGASKGVVSSHGNLIAMVQTIVGRFFVGEGLQTFICTVPMFHIYGLAAFATGLLAAGSTIVVLSKFEIHEMFAAIEKYKATYLPLVPPILVAMVNNANQIKAKYDLSSLHSILSGGAPLSKEVIEGVVERYPQVRILQGYGLTESTAIGASTDTLEESRRYGTAGLLSPNMEAKIVDPESGEALPVNKTGELWLRGPSVMKGYFSNEEATASTLSPEGWLKTGDLCYIDDDGHIFVVDRLKELIKYKGYQVPPAELEALLLTHPQIADAAVIPFPDKEVGQFPMAYIVRKAGSDISETTVMEFVAKQVAPYKRIRRVSFVSSIPKNASGKILRKDLIKLATSKL* 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g01235 570 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 31 564 - -
Pte10g01235 570 FunFam Long-chain-fatty-acid--CoA ligase FadD 39 467 - -
Pte10g01235 570 Gene3D - 468 569 IPR045851 -
Pte10g01235 570 FunFam 4-coumarate--CoA ligase 2 468 569 - -
Pte10g01235 570 CDD 4CL 47 562 - -
Pte10g01235 570 ProSitePatterns Putative AMP-binding domain signature. 220 231 IPR020845 -
Pte10g01235 570 Pfam AMP-binding enzyme C-terminal domain 481 556 IPR025110 -
Pte10g01235 570 SUPERFAMILY Acetyl-CoA synthetase-like 16 567 - -
Pte10g01235 570 Gene3D - 36 467 IPR042099 -
Pte10g01235 570 Pfam AMP-binding enzyme 62 472 IPR000873 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g01235 Pte-Chr10 30241856 30245448 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g01235 15 571 Monolignol Biosynthesis Gene Families AT1G20480 62.321 0.0 732
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g01235 K10526 - qsa:O6P43_016337 868.996