Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g01232 ATGGCATTTTGCAATAGAATTGGAAGCCTCTTGATGCGGGGTGCTGCTCAGAACAGTCGAGCACCGTCAGCTATCTTTAATTCCTTTCGCTGCATGTCTTCAAGTTCAACGAAGCTTTTTGTTGGTGGTCTTTCATGGGGAGTTGATGACAATTCTCTGAAAGATGCATTTTCTGGCTTTGGAGATGTTGTCGAGGCAAGAGTTATCGTCCACCGGGACACTGGAAGGTCTAAAGGATTTGGATTTGTCAACTTCTCCAGTGGGGAATCAGCAAGTGCTGCAGTAACTGCAATGGATGGCCAGGAACTAGATGGGCGCAACATCCGTGTGAGTCTTGCCGCAGACAAACCTCCTGCATCTCGGAGTTTTGGTGGTGGTTTCCGTGGGAATGGAGATTTTGGAAACCCAAGCTTTTAA 417 0.4748 MAFCNRIGSLLMRGAAQNSRAPSAIFNSFRCMSSSSTKLFVGGLSWGVDDNSLKDAFSGFGDVVEARVIVHRDTGRSKGFGFVNFSSGESASAAVTAMDGQELDGRNIRVSLAADKPPASRSFGGGFRGNGDFGNPSF* 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g01232 138 SUPERFAMILY RNA-binding domain, RBD 32 135 IPR035979 GO:0003676
Pte10g01232 138 CDD RRM2_NsCP33_like 38 113 - -
Pte10g01232 138 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 37 115 IPR000504 GO:0003723
Pte10g01232 138 Gene3D - 17 136 IPR012677 -
Pte10g01232 138 SMART rrm1_1 38 111 IPR000504 GO:0003723
Pte10g01232 138 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 39 109 IPR000504 GO:0003723
Pte10g01232 138 PANTHER GEO13361P1-RELATED 30 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g01232 Pte-Chr10 30215435 30218356 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g01232 39 116 Eukaryotic Initiation Factors Gene Family AT1G34140 43.590 2.39e-13 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g01232 - - zju:107422279 171.785