Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pte10g01229 | ATGGCTGATAAGAGTACCTCGGCGGTTGCCAATCCGGCGTGGGTTAAGCAAGCTCAGGAGGCAAAACTTAAGACTGAGGCTGAGAAAGCTGCGGCAGCAAAAGCTGCATTTGAAGCTACATTCAAAGCTGTTGACAAAACTCGCGAGAAACAAACTGTTGTATCAGACAGTGATTCTGAGGAGACCGAGGACTTGGAGAACAAGCCTATTGGACCTGTGGACCCGTCCAAGTGTACAGCCGCGGGTAGTGGGATTGGTGGTGGGACGGCCTGTGCACCGACTACATTTGTTGTGGTGACCAAGGATGCTGATGGCAGAAAGGTACCATATGGTGGCGCACAAATCAAGGTGAAGGTGTCGCCAGGTATGGGCGTTGGGGGGTCTGATCAAGAAGGGATTGTGAAGGATATGGGTGATGGAACTTACACTGTGACTTATACTGTACAGAAAAGAGGGAATTACATGGTGAATGTTGAATGCAATGGAAAGCCTATTATGGGAAGTCCATTTCCTGTGTTCTTCAGTGCAGGTACTAGTACTGGGGGACTGCTAGGCCTTGCTCCATCCACATTCCCAAATCTAGTGAACCAAACCATGCCGAACATGCCCAATTATTCAGGTTCTGTTTCTGGGGCATTCCCAGGACTTGTTGGAATGATTCCTGGTGCTGTTTCTGGATCTTCTGGTGGCATCATTCTGCCCGGAATTGGAGCTTCTTTTGGGGAGATCTGTCGAGAATATCTCAATGGATTATGTCCAAAAACTGATTGTAAGTTGACACACCCACCACAGAATTTGCTTATGGCTGCTGTGACTGCAACTAATTCTATGGGGACACTTAGTCAAGCCCCAATGCCTCCTTCTGCAGCAGCCATGGCTGCTGCTCAGGCAATTGTTGCACTTCAAGCTTGGAATGCCCATGCTGCACAGGCCCAAGCGCAAATTCAATCAGCCAAGAACTCTGCTGGGTCACCTGAAAAAGCTGGGAAGGACGATTCATTGAAGAAAACGCTTCAAGTTAGCAATCTCAGTCCACTTCTCACAGTGGAACAACTGAAGCAATTGTTTAGTCTTTATGGCACAATTAGAGAGTGTTTTATAACTGATTCAAAGCATTTTGCTTATATAGAATACTCAAAGCCTGAAGAGGCAACTGCTGCGTTGGCATTGAATAACATGGATATTGGAGGGCGCCCTTTGAATGTTGAAATGGCAAAGTCACTTCCTCAAAAAATTTTGAGTTCGTCATTGGCATCGTCTTCTAGTCCTTCTATGGTTGAGCAACACACTATTGTCATGCAGCAACAGTTCCAGCAGGCATTGCTCATGCAACAAACTATGATAACACAAATGGCAGCCAACAAAGCTGCTGCTGTGAAATCAAAAGCAGATTTGGCTGCAGCCAGAGCAGCTGAAATTAGTAAGAAATTAAGCGCCGATGGAGTTGTAATTGAAGAAAAAGAAACAAAAAGCAAGTCTAGATCCCCTAGCCCGTCACGCCAAAGATCCAAATCAAAGTCAAGATCACCTATAAATTACAGGAGGAGGCAGCGGTCTCGATCCTACTCACCTCGTCCACGTCATATGAGAGAACGTAGATCTAGGTCGCCATATAGATATCACTATTCCAGATATGAAATTGAGAGATCTTATCGGAGCAGGGATATTAGAGAAAGAGGCAGAAGAAAGGATTCAGATAGATCACGTGATCGCCATCCATCTGTTTCTCGGCGAAATAGGAGTAGGAGCATGAGCCCTTCTAGAAGAACATATCGAGATGACTCCTTGTCTCCAAGGCACCGAGAGAGTCCACCACACAGAACAAAGAAATCTTCTCATACTCGTTCTAAATCACCTAGTTGTCACAAGAGAAGTAGGTCTTCTCCAAGAAATGATGATGAATGTAAAGAGAGACACCGCCGAAGACGTTCAAAGTCGAAATCTATTGAAGATAAGGTCTCTGACAAGAGAGATGGCAGTTCAGAGAGGAAGTTAAAGCACAGGGAGAGAAGGCGGTCCAGGTCATTATCAGAAGACAAGCTTTACAGAAGCAATCGCTCATCACCGAGAACCAGAAAAAGTGATAGTAGATCCAAACAAAAAAGGCGGTCAATGTCAAGATCCTCAGAGGGGAAGCACCGTTCCAGTGATAAGCTAGATGAGTCCAGACGGTCAAAATATCGTGAAAGACGGTCGAGATCAAAATCAGATGAACTTGACCAACAATTGGCTGAAAGAACAGAGAAAAGTAGAGAGAAAAGATCAAAGCATCACCATAGAAGAAGATCCCGGTCAAAATCAGTGGAGGCTAAGCCTCACCGAAAAGAGACAGAAGGTGGGGACACTAAATATAAGAAGTCAGAGCAACTTGATGCAGAGCATTTCAAGTTGATATCTTTAGAAGCAAAAAGCCCCATGGCAAGCACTTCCTCAAATGAGGATTCAGATGATGATAGTTTGAATAACAAACGACATTCTGGCACAAAGTCTACTGAAAAACATTTCTCAAATGATAGGGACAACAATGGATTCGAGCGGCATCATGGAGATACTAGGTTGACTCCAATGTCTGAAGGTAATAAAGAACACATATGA | 2595 | 0.4478 | MADKSTSAVANPAWVKQAQEAKLKTEAEKAAAAKAAFEATFKAVDKTREKQTVVSDSDSEETEDLENKPIGPVDPSKCTAAGSGIGGGTACAPTTFVVVTKDADGRKVPYGGAQIKVKVSPGMGVGGSDQEGIVKDMGDGTYTVTYTVQKRGNYMVNVECNGKPIMGSPFPVFFSAGTSTGGLLGLAPSTFPNLVNQTMPNMPNYSGSVSGAFPGLVGMIPGAVSGSSGGIILPGIGASFGEICREYLNGLCPKTDCKLTHPPQNLLMAAVTATNSMGTLSQAPMPPSAAAMAAAQAIVALQAWNAHAAQAQAQIQSAKNSAGSPEKAGKDDSLKKTLQVSNLSPLLTVEQLKQLFSLYGTIRECFITDSKHFAYIEYSKPEEATAALALNNMDIGGRPLNVEMAKSLPQKILSSSLASSSSPSMVEQHTIVMQQQFQQALLMQQTMITQMAANKAAAVKSKADLAAARAAEISKKLSADGVVIEEKETKSKSRSPSPSRQRSKSKSRSPINYRRRQRSRSYSPRPRHMRERRSRSPYRYHYSRYEIERSYRSRDIRERGRRKDSDRSRDRHPSVSRRNRSRSMSPSRRTYRDDSLSPRHRESPPHRTKKSSHTRSKSPSCHKRSRSSPRNDDECKERHRRRRSKSKSIEDKVSDKRDGSSERKLKHRERRRSRSLSEDKLYRSNRSSPRTRKSDSRSKQKRRSMSRSSEGKHRSSDKLDESRRSKYRERRSRSKSDELDQQLAERTEKSREKRSKHHHRRRSRSKSVEAKPHRKETEGGDTKYKKSEQLDAEHFKLISLEAKSPMASTSSNEDSDDDSLNNKRHSGTKSTEKHFSNDRDNNGFERHHGDTRLTPMSEGNKEHI* | 865 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pte10g01229 | 864 | ProSiteProfiles | Zinc finger C3H1-type profile. | 243 | 264 | IPR000571 | GO:0046872 | |
Pte10g01229 | 864 | SUPERFAMILY | E set domains | 72 | 172 | IPR014756 | - | |
Pte10g01229 | 864 | Coils | Coil | 15 | 36 | - | - | |
Pte10g01229 | 864 | SMART | rrm1_1 | 337 | 403 | IPR000504 | GO:0003723 | |
Pte10g01229 | 864 | Gene3D | - | 297 | 412 | IPR012677 | - | |
Pte10g01229 | 864 | ProSiteProfiles | Filamin/ABP280 repeat profile. | 70 | 174 | IPR017868 | - | |
Pte10g01229 | 864 | MobiDBLite | consensus disorder prediction | 556 | 573 | - | - | |
Pte10g01229 | 864 | Gene3D | Immunoglobulins | 72 | 180 | IPR013783 | - | |
Pte10g01229 | 864 | PANTHER | SERINE/ARGININE-RICH SPLICING FACTOR | 277 | 639 | - | - | |
Pte10g01229 | 864 | SUPERFAMILY | RNA-binding domain, RBD | 314 | 411 | IPR035979 | GO:0003676 | |
Pte10g01229 | 864 | MobiDBLite | consensus disorder prediction | 556 | 864 | - | - | |
Pte10g01229 | 864 | MobiDBLite | consensus disorder prediction | 497 | 535 | - | - | |
Pte10g01229 | 864 | MobiDBLite | consensus disorder prediction | 672 | 694 | - | - | |
Pte10g01229 | 864 | MobiDBLite | consensus disorder prediction | 586 | 602 | - | - | |
Pte10g01229 | 864 | Pfam | Filamin/ABP280 repeat | 72 | 170 | IPR017868 | - | |
Pte10g01229 | 864 | Coils | Coil | 301 | 321 | - | - | |
Pte10g01229 | 864 | SMART | flmn_3 | 74 | 177 | IPR001298 | GO:0005515 | |
Pte10g01229 | 864 | MobiDBLite | consensus disorder prediction | 769 | 798 | - | - | |
Pte10g01229 | 864 | CDD | RRM_SF | 338 | 403 | - | - | |
Pte10g01229 | 864 | MobiDBLite | consensus disorder prediction | 752 | 768 | - | - | |
Pte10g01229 | 864 | MobiDBLite | consensus disorder prediction | 625 | 639 | - | - | |
Pte10g01229 | 864 | MobiDBLite | consensus disorder prediction | 647 | 665 | - | - | |
Pte10g01229 | 864 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 336 | 407 | IPR000504 | GO:0003723 | |
Pte10g01229 | 864 | MobiDBLite | consensus disorder prediction | 484 | 538 | - | - | |
Pte10g01229 | 864 | MobiDBLite | consensus disorder prediction | 47 | 76 | - | - | |
Pte10g01229 | 864 | MobiDBLite | consensus disorder prediction | 603 | 624 | - | - | |
Pte10g01229 | 864 | MobiDBLite | consensus disorder prediction | 701 | 751 | - | - | |
Pte10g01229 | 864 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 340 | 400 | IPR000504 | GO:0003723 | |
Pte10g01229 | 864 | MobiDBLite | consensus disorder prediction | 816 | 864 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pte10g01229 | Pte-Chr10 | 30183868 | 30190747 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pte10g01229 | 294 | 406 | Eukaryotic Initiation Factors Gene Family | AT2G23350 | 31.008 | 2.90e-06 | 49.3 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pte10g01229 | - | - | cave:132179779 | 792.727 |