Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g01229 ATGGCTGATAAGAGTACCTCGGCGGTTGCCAATCCGGCGTGGGTTAAGCAAGCTCAGGAGGCAAAACTTAAGACTGAGGCTGAGAAAGCTGCGGCAGCAAAAGCTGCATTTGAAGCTACATTCAAAGCTGTTGACAAAACTCGCGAGAAACAAACTGTTGTATCAGACAGTGATTCTGAGGAGACCGAGGACTTGGAGAACAAGCCTATTGGACCTGTGGACCCGTCCAAGTGTACAGCCGCGGGTAGTGGGATTGGTGGTGGGACGGCCTGTGCACCGACTACATTTGTTGTGGTGACCAAGGATGCTGATGGCAGAAAGGTACCATATGGTGGCGCACAAATCAAGGTGAAGGTGTCGCCAGGTATGGGCGTTGGGGGGTCTGATCAAGAAGGGATTGTGAAGGATATGGGTGATGGAACTTACACTGTGACTTATACTGTACAGAAAAGAGGGAATTACATGGTGAATGTTGAATGCAATGGAAAGCCTATTATGGGAAGTCCATTTCCTGTGTTCTTCAGTGCAGGTACTAGTACTGGGGGACTGCTAGGCCTTGCTCCATCCACATTCCCAAATCTAGTGAACCAAACCATGCCGAACATGCCCAATTATTCAGGTTCTGTTTCTGGGGCATTCCCAGGACTTGTTGGAATGATTCCTGGTGCTGTTTCTGGATCTTCTGGTGGCATCATTCTGCCCGGAATTGGAGCTTCTTTTGGGGAGATCTGTCGAGAATATCTCAATGGATTATGTCCAAAAACTGATTGTAAGTTGACACACCCACCACAGAATTTGCTTATGGCTGCTGTGACTGCAACTAATTCTATGGGGACACTTAGTCAAGCCCCAATGCCTCCTTCTGCAGCAGCCATGGCTGCTGCTCAGGCAATTGTTGCACTTCAAGCTTGGAATGCCCATGCTGCACAGGCCCAAGCGCAAATTCAATCAGCCAAGAACTCTGCTGGGTCACCTGAAAAAGCTGGGAAGGACGATTCATTGAAGAAAACGCTTCAAGTTAGCAATCTCAGTCCACTTCTCACAGTGGAACAACTGAAGCAATTGTTTAGTCTTTATGGCACAATTAGAGAGTGTTTTATAACTGATTCAAAGCATTTTGCTTATATAGAATACTCAAAGCCTGAAGAGGCAACTGCTGCGTTGGCATTGAATAACATGGATATTGGAGGGCGCCCTTTGAATGTTGAAATGGCAAAGTCACTTCCTCAAAAAATTTTGAGTTCGTCATTGGCATCGTCTTCTAGTCCTTCTATGGTTGAGCAACACACTATTGTCATGCAGCAACAGTTCCAGCAGGCATTGCTCATGCAACAAACTATGATAACACAAATGGCAGCCAACAAAGCTGCTGCTGTGAAATCAAAAGCAGATTTGGCTGCAGCCAGAGCAGCTGAAATTAGTAAGAAATTAAGCGCCGATGGAGTTGTAATTGAAGAAAAAGAAACAAAAAGCAAGTCTAGATCCCCTAGCCCGTCACGCCAAAGATCCAAATCAAAGTCAAGATCACCTATAAATTACAGGAGGAGGCAGCGGTCTCGATCCTACTCACCTCGTCCACGTCATATGAGAGAACGTAGATCTAGGTCGCCATATAGATATCACTATTCCAGATATGAAATTGAGAGATCTTATCGGAGCAGGGATATTAGAGAAAGAGGCAGAAGAAAGGATTCAGATAGATCACGTGATCGCCATCCATCTGTTTCTCGGCGAAATAGGAGTAGGAGCATGAGCCCTTCTAGAAGAACATATCGAGATGACTCCTTGTCTCCAAGGCACCGAGAGAGTCCACCACACAGAACAAAGAAATCTTCTCATACTCGTTCTAAATCACCTAGTTGTCACAAGAGAAGTAGGTCTTCTCCAAGAAATGATGATGAATGTAAAGAGAGACACCGCCGAAGACGTTCAAAGTCGAAATCTATTGAAGATAAGGTCTCTGACAAGAGAGATGGCAGTTCAGAGAGGAAGTTAAAGCACAGGGAGAGAAGGCGGTCCAGGTCATTATCAGAAGACAAGCTTTACAGAAGCAATCGCTCATCACCGAGAACCAGAAAAAGTGATAGTAGATCCAAACAAAAAAGGCGGTCAATGTCAAGATCCTCAGAGGGGAAGCACCGTTCCAGTGATAAGCTAGATGAGTCCAGACGGTCAAAATATCGTGAAAGACGGTCGAGATCAAAATCAGATGAACTTGACCAACAATTGGCTGAAAGAACAGAGAAAAGTAGAGAGAAAAGATCAAAGCATCACCATAGAAGAAGATCCCGGTCAAAATCAGTGGAGGCTAAGCCTCACCGAAAAGAGACAGAAGGTGGGGACACTAAATATAAGAAGTCAGAGCAACTTGATGCAGAGCATTTCAAGTTGATATCTTTAGAAGCAAAAAGCCCCATGGCAAGCACTTCCTCAAATGAGGATTCAGATGATGATAGTTTGAATAACAAACGACATTCTGGCACAAAGTCTACTGAAAAACATTTCTCAAATGATAGGGACAACAATGGATTCGAGCGGCATCATGGAGATACTAGGTTGACTCCAATGTCTGAAGGTAATAAAGAACACATATGA 2595 0.4478 MADKSTSAVANPAWVKQAQEAKLKTEAEKAAAAKAAFEATFKAVDKTREKQTVVSDSDSEETEDLENKPIGPVDPSKCTAAGSGIGGGTACAPTTFVVVTKDADGRKVPYGGAQIKVKVSPGMGVGGSDQEGIVKDMGDGTYTVTYTVQKRGNYMVNVECNGKPIMGSPFPVFFSAGTSTGGLLGLAPSTFPNLVNQTMPNMPNYSGSVSGAFPGLVGMIPGAVSGSSGGIILPGIGASFGEICREYLNGLCPKTDCKLTHPPQNLLMAAVTATNSMGTLSQAPMPPSAAAMAAAQAIVALQAWNAHAAQAQAQIQSAKNSAGSPEKAGKDDSLKKTLQVSNLSPLLTVEQLKQLFSLYGTIRECFITDSKHFAYIEYSKPEEATAALALNNMDIGGRPLNVEMAKSLPQKILSSSLASSSSPSMVEQHTIVMQQQFQQALLMQQTMITQMAANKAAAVKSKADLAAARAAEISKKLSADGVVIEEKETKSKSRSPSPSRQRSKSKSRSPINYRRRQRSRSYSPRPRHMRERRSRSPYRYHYSRYEIERSYRSRDIRERGRRKDSDRSRDRHPSVSRRNRSRSMSPSRRTYRDDSLSPRHRESPPHRTKKSSHTRSKSPSCHKRSRSSPRNDDECKERHRRRRSKSKSIEDKVSDKRDGSSERKLKHRERRRSRSLSEDKLYRSNRSSPRTRKSDSRSKQKRRSMSRSSEGKHRSSDKLDESRRSKYRERRSRSKSDELDQQLAERTEKSREKRSKHHHRRRSRSKSVEAKPHRKETEGGDTKYKKSEQLDAEHFKLISLEAKSPMASTSSNEDSDDDSLNNKRHSGTKSTEKHFSNDRDNNGFERHHGDTRLTPMSEGNKEHI* 865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g01229 864 ProSiteProfiles Zinc finger C3H1-type profile. 243 264 IPR000571 GO:0046872
Pte10g01229 864 SUPERFAMILY E set domains 72 172 IPR014756 -
Pte10g01229 864 Coils Coil 15 36 - -
Pte10g01229 864 SMART rrm1_1 337 403 IPR000504 GO:0003723
Pte10g01229 864 Gene3D - 297 412 IPR012677 -
Pte10g01229 864 ProSiteProfiles Filamin/ABP280 repeat profile. 70 174 IPR017868 -
Pte10g01229 864 MobiDBLite consensus disorder prediction 556 573 - -
Pte10g01229 864 Gene3D Immunoglobulins 72 180 IPR013783 -
Pte10g01229 864 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 277 639 - -
Pte10g01229 864 SUPERFAMILY RNA-binding domain, RBD 314 411 IPR035979 GO:0003676
Pte10g01229 864 MobiDBLite consensus disorder prediction 556 864 - -
Pte10g01229 864 MobiDBLite consensus disorder prediction 497 535 - -
Pte10g01229 864 MobiDBLite consensus disorder prediction 672 694 - -
Pte10g01229 864 MobiDBLite consensus disorder prediction 586 602 - -
Pte10g01229 864 Pfam Filamin/ABP280 repeat 72 170 IPR017868 -
Pte10g01229 864 Coils Coil 301 321 - -
Pte10g01229 864 SMART flmn_3 74 177 IPR001298 GO:0005515
Pte10g01229 864 MobiDBLite consensus disorder prediction 769 798 - -
Pte10g01229 864 CDD RRM_SF 338 403 - -
Pte10g01229 864 MobiDBLite consensus disorder prediction 752 768 - -
Pte10g01229 864 MobiDBLite consensus disorder prediction 625 639 - -
Pte10g01229 864 MobiDBLite consensus disorder prediction 647 665 - -
Pte10g01229 864 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 336 407 IPR000504 GO:0003723
Pte10g01229 864 MobiDBLite consensus disorder prediction 484 538 - -
Pte10g01229 864 MobiDBLite consensus disorder prediction 47 76 - -
Pte10g01229 864 MobiDBLite consensus disorder prediction 603 624 - -
Pte10g01229 864 MobiDBLite consensus disorder prediction 701 751 - -
Pte10g01229 864 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 340 400 IPR000504 GO:0003723
Pte10g01229 864 MobiDBLite consensus disorder prediction 816 864 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g01229 Pte-Chr10 30183868 30190747 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g01229 294 406 Eukaryotic Initiation Factors Gene Family AT2G23350 31.008 2.90e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g01229 - - cave:132179779 792.727