LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte10g01227	ATGGGAATCGAGCATTACCATGTAATTGAGCTAGTTGGTGAAGGCTCCTTTGGAAAAGTCTACAAAGGAAGACGCAAATTCACTGGCCAGACCGTTGCAATGAAGTTCATTATGAAGCATGGAAAAAGCGAGAAGGATCTCCAGAACTTACGACAAGAAATTGACATTTTACGAAAACTGAAACATGAACATATTATTGAGATGCTGGACTCCTTTGAAACCCCACAAGAATTTTGTGTTGTCACGGAGTTCGCGCAGGGTGAACTGTTTGAGATTCTGGAGGACGATAAATGCCTTCCTGAAGAACAAGTTCAATCAATTGCAAAGCAACTGGTGAAAGCATTGCATTACTTGCACAGTAACCGTATCATCCATCGCGACATGAAACCTCAGAACATACTTATCGGAGCAGGATCTGTGGTCAAGCTTTGTGATTTCGGGTTCGCAAGAGCAATGTCCGCTAATACTGTTGTCTTACGCTCCATAAAAGATTTTGGTTTTTGTGCAGGAACTCCGCTATACATGGCTCCAGAACTAGTGAGAGAGCAGCCTTACAACCACACTGTGGACTTGTGGTCCCTTGGTGTCATTTTGTATGAGTTATTTGTGGGCCGGCCCCCATTCTATACAAATTCGGTTTATGCACTAATCCGACACATTGTAAAGGATCCTGTTAACTATCCTGACAATATGAGTTCAAATTTCAGAAACTTCTTAAAAGGGTTGCTTAATAAGGTACCACAAAGTCGGCTGTCTTGGCCTGCTCTTCTAGAGCACCCATTTGTTAGAGAAAATTCGGATGAATTGCAAGGCGGGGAAATATGTCCTCTGCCTACAATATCCAGGGCAAGCGGTGCAGCATGGAGGACAGAAGGAAATACCATGCAGGCTTCAGTTAGCCCCGTAGTTTCCAATCCTGCAAGTGGAACCTGCAATGCTGATATGAAGGGAAATATCTCTCCACCCGTTGACTGTGATTCCCGCATACAAAATGCGAACCAAGATAAAGCAAATACACCGCAGCAGCAGAAGTTGTTAGATATTAGAAGTCCAGACGATGGTAAAAAATCAGGTTGCCAGACATTGGACAGGTTGGAAAATAACTCTGCTACCGTTAAAGGGGCAAAACTAATTGCTCAAGATAGTGAAGCCTTAAGACAGATATTGCTGCCGTTGAAAACTTGGTCTAAAGGATCTACATACAGGGACCAAGATGTTCTTCAGTCAAATCAGTCTCTCAGAATTCTCTCGAACCTTGTCGCTGGGGGTGCTATCTATGCTAGTGGTATTCTGGATGAAATAATTAGTCAGCTCCTTCTTTTTCATGGAGCCGTTTTTGGTATAAACTCCTCTGAAGTTATTGATCTGACTGTAAAGAGCTTCTCATTCATTAGATCGATGCTAGATAGCGAACATTGCACTGTGAGCTCGTGTTACAGACACTGGGTTACGCTCGTTGAAATCTTTTCAAAGGTTGTTTCTACAAAAGACGAGACTGGCAGAGTTCTTTATGAATCTAGCGCCTGTATTGTAATTATATTATATAAAGTTCTCCTATCCCTCAAATCATCTCCCTCAAATTCTGACGAGATGGTAAAAAGAATCCTGGATCACGCCAGGACATCAGGTCTGGTGGATCATTTATGCCTCGGCCTAGCAACTTCAGGAGCAAGTCTTATTTCAGGTTCTTCAAATATGTTGCGCGCTGCATGTGAAGCATGCAGCGCAATGTGGTATTTGATAAATGCCATGGAAATTGTTTACACTAGAACGAAGCCCATTTTATTTCCTCTAAGTGCTGTGCAAAGTCATTCTAGAGTCGAAATTAGGGATCACGAACAAGGCTCATTACTTGGAGCAGAAGCAGCCAAGGTTGTTGATACATTAACAAGGACATTCTTGAGGTCAAAACATGTACAGGTTGCTATTTTCTGTTGTATTCGCCAGCGTATTGAAGCAGCTATGTCCGCTGGAATTCAGCTTTTAACAAGGTGCTGCATGCATAATCCAACCATTCCTGCTGTTCTATGTGGCCTCCCTAGTTCTCTCCCACCAACTACAATTGTTAGTGGTGCTGGTGAAGGGACAATTGTTTCAGAGATATTCTCTTTGTTATCTTGGTGTAAAGATGCACAAACTGGTGAAAGTAATTTGAAGTGCAAATTAACGAATCCTTCTGCCCTAATTCTTCACTCATGCCTCCTCCTTGCAACCACTGCACAATGTTTGAAGTCTATGGGGAGAAATTCAGCGCTGTTTATGCTTACTAACGCACCGAAAAAGCAGCTTGCTCGCCTCTCTGTGCTGTCACATTATGTTTCTTCGGATGATAAAGTGAAACCCTCATCTCAATCTCATTCCGCATCAGTTATGCTGGCTCTTGCATCAATACTATCCCTTGAACATGGAGCGTCAGTTGAGTCATCAGTTGCTGAGATTGCTTTACCTTTAATTCCTCGTACCAGTACACTATGTGATTATCTCAAAGTTTCACCTGGCAATGAGACTGTAAAAGATTCTGGCAAGCTTTCCTATTGGCATGGGCTAAGGGATGGATGTGTGGGTCTTTTGGAGTCTAGACTTAAATGGGGAGGACCTTTAGCTGTTCAGCAGTTGTGTGCTAGTGGAATCCCTCAACTCCTCATTGATTTATTAGCGAAAAACCACAAAAGTTCTGGTACTCAAAATGATTGCTCAAATGATAAAGTTGGGCTATCCCCCCTCGCTGTTGTATGGACCGTTTCTTCAATATGTCACTGCCTCTCTGGTGGCGCTTCAACTTTTCGTCAAATCTTACTTAAGGGCGAAAATGTCAAGCTTTTCTCTGAATTGATAACTGATCCGCATCTGCAATTGGTAAAATTTTGGTCAGGGCCGGGCGGAGGAAAAGCAGGAGTTAGAGAGATAATAAACGCAATTATAGATCTCTTAGCATTTCCTTTTGTTGCCGTACAAAATGGCAATGGGTTGCCATCTACCGCTGCCTCGGTGAACAGTGGTTTTATTCTGAACTTAGGCTCGCAAGGTGGTAGAGTAGGCATGGAAGACAGGGATACTTTAAAGGCAATTGAAGAAGATATGGGCAAATATATTAAAGTTCTACTTGAGGTAGGAGTTCCTGCCGTTATCCTTCGATGCTTAGATCATATGGAGTCACGAGATTTGGGAAGGCCTGTAGCTCTCATCGCTAAATTGATAGTCCATCGACCTGTAGCAGTACAGTTTGTAGGGAAGGGTTTATTGGATAAAAACTTGATGAGACGGTTGTTTGATTCTTCTAGCCCGAGAGAAGTTATACTGGATGTCTTGATGATAGTGTCTGATCTTGCTCGTATGGATAAGGCATTCTACGAGTATATCAAAGGTGCATCCATCATGGAGTCCTTAAAATGTTTTCTGACTCATGAAGATCCCAACATACGGGCTAAAGCTTGCAGTGCTCTTGGAAACATGTGTCGCCATACGTCCTACTTTTATAGCTCACTTGCAGCACATCAAATTATCAGCATCCTTATTGATCGCTGTGCTGATCCAGATAAACGAACACGGAAATTTGCTTGCTTCGCGATTGGTAATGCCGCCTACCACAATGACATGTTATATGAAGAGCTGAGGAGATCTATACCTCAGTTTGCAAATCTATTGCTTATGGCGGAAGAGGACAAGACTAAAGCAAATGCCGCAGGTGCCCTCAGTAATCTTGTTCGTAATTCTGACAAGCTTTGCGGAGATATCGTGTCTAAAGGAGCCATTCAGTCTTTGCTGAAGTTGGTTGCTGACTGCTCCATTGTAGCACTGAGCCCTAGTAGAAAGGATGCAGTAAGTGAATCTCCATTGAAGATAGCTCTCTTTTCTCTGGCTAAGATGTGTGCCCATCCACCATGTAGAAACTTCCTTCGTTCATCTGAGCTGTTCCCTGTGATCGTACGGCTTAAGCAATCTCCTGAATCATCAATTGCGAATTATGCCAATGCTATAATCAGCAGAGTAGCCGATTCTTGA	4002	0.4288	MGIEHYHVIELVGEGSFGKVYKGRRKFTGQTVAMKFIMKHGKSEKDLQNLRQEIDILRKLKHEHIIEMLDSFETPQEFCVVTEFAQGELFEILEDDKCLPEEQVQSIAKQLVKALHYLHSNRIIHRDMKPQNILIGAGSVVKLCDFGFARAMSANTVVLRSIKDFGFCAGTPLYMAPELVREQPYNHTVDLWSLGVILYELFVGRPPFYTNSVYALIRHIVKDPVNYPDNMSSNFRNFLKGLLNKVPQSRLSWPALLEHPFVRENSDELQGGEICPLPTISRASGAAWRTEGNTMQASVSPVVSNPASGTCNADMKGNISPPVDCDSRIQNANQDKANTPQQQKLLDIRSPDDGKKSGCQTLDRLENNSATVKGAKLIAQDSEALRQILLPLKTWSKGSTYRDQDVLQSNQSLRILSNLVAGGAIYASGILDEIISQLLLFHGAVFGINSSEVIDLTVKSFSFIRSMLDSEHCTVSSCYRHWVTLVEIFSKVVSTKDETGRVLYESSACIVIILYKVLLSLKSSPSNSDEMVKRILDHARTSGLVDHLCLGLATSGASLISGSSNMLRAACEACSAMWYLINAMEIVYTRTKPILFPLSAVQSHSRVEIRDHEQGSLLGAEAAKVVDTLTRTFLRSKHVQVAIFCCIRQRIEAAMSAGIQLLTRCCMHNPTIPAVLCGLPSSLPPTTIVSGAGEGTIVSEIFSLLSWCKDAQTGESNLKCKLTNPSALILHSCLLLATTAQCLKSMGRNSALFMLTNAPKKQLARLSVLSHYVSSDDKVKPSSQSHSASVMLALASILSLEHGASVESSVAEIALPLIPRTSTLCDYLKVSPGNETVKDSGKLSYWHGLRDGCVGLLESRLKWGGPLAVQQLCASGIPQLLIDLLAKNHKSSGTQNDCSNDKVGLSPLAVVWTVSSICHCLSGGASTFRQILLKGENVKLFSELITDPHLQLVKFWSGPGGGKAGVREIINAIIDLLAFPFVAVQNGNGLPSTAASVNSGFILNLGSQGGRVGMEDRDTLKAIEEDMGKYIKVLLEVGVPAVILRCLDHMESRDLGRPVALIAKLIVHRPVAVQFVGKGLLDKNLMRRLFDSSSPREVILDVLMIVSDLARMDKAFYEYIKGASIMESLKCFLTHEDPNIRAKACSALGNMCRHTSYFYSSLAAHQIISILIDRCADPDKRTRKFACFAIGNAAYHNDMLYEELRRSIPQFANLLLMAEEDKTKANAAGALSNLVRNSDKLCGDIVSKGAIQSLLKLVADCSIVALSPSRKDAVSESPLKIALFSLAKMCAHPPCRNFLRSSELFPVIVRLKQSPESSIANYANAIISRVADS*	1334

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pte10g01227	1333	ProSitePatterns	Protein kinases ATP-binding region signature.	12	39	IPR017441	GO:0005524
	Pte10g01227	1333	ProSiteProfiles	Protein kinase domain profile.	6	262	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pte10g01227	1333	Gene3D	Transferase(Phosphotransferase) domain 1	2	290	-	-
	Pte10g01227	1333	FunFam	Serine/threonine-protein kinase TIO	1060	1329	-	-
	Pte10g01227	1333	Gene3D	-	1059	1330	IPR011989	-
	Pte10g01227	1333	MobiDBLite	consensus disorder prediction	334	356	-	-
	Pte10g01227	1333	SUPERFAMILY	ARM repeat	1019	1328	IPR016024	-
	Pte10g01227	1333	SMART	serkin_6	6	262	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pte10g01227	1333	CDD	STKc_STK36	4	262	-	-
	Pte10g01227	1333	SUPERFAMILY	Protein kinase-like (PK-like)	4	306	IPR011009	-
	Pte10g01227	1333	Pfam	Protein kinase domain	6	262	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pte10g01227	1333	PANTHER	PROTEIN KINASE RELATED	3	1330	-	-
	Pte10g01227	1333	FunFam	Serine/threonine-protein kinase 36	3	314	-	-
	Pte10g01227	1333	Coils	Coil	40	67	-	-
	Pte10g01227	1333	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	123	135	IPR008271	GO:0004672\|GO:0006468
	Pte10g01227	1333	FunFam	Aurora kinase A	1	88	-	-
	Pte10g01227	1333	SMART	arm_5	1113	1153	IPR000225	GO:0005515
	Pte10g01227	1333	SMART	arm_5	865	916	IPR000225	GO:0005515
	Pte10g01227	1333	SMART	arm_5	1197	1236	IPR000225	GO:0005515

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte10g01227	Pte-Chr10	30157207	30167421	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte10g01227	1	318	AGC Kinase Gene Family	AT3G08720	35.562	3.71e-45	169

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	ULK_Fused	Pte10g01227		Pkinase	1.7e-75	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte10g01227	K06228		-	jre:109012861	1892.09