Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pte10g01222 | ATGTCGGGGGTGTCTCTCAAGTGTGGAGACTGCGGGACACTGTTGAGATCAGTGCAGGAAGCCCAGGAGCACGCTGAGCTCACTTCTCACTCCGACTTCTCTGAATCCATCGAAGCCGTTCTCAACCTTGTCTGCACTGTTTGTGGCAAACCATGCCGATCTAAAACCGAAAGTGATTTACATACCAAAAGAACCGGCCATACTGATTTTGAAGATAAGACCATGGAGGCAGTAAAGCCCCTAAGTTTAGAGGCTCCAATGGCTGATACATCAATGGAAGACGCTGCGACTGCAACTACCTGTGAGCCTCAAGAAATGGTTGTACCTGAGGTAAACAAAAGTCTGCTAGAGGAACTTGAGTCAATGGGCTTTACAACACCAAGGGCAACACGTGCTCTTCATTACTCCAGTAATGCTAGTGTAGAGGCTGCTGTTAATTGGTTAGTTGAACATGAGAATGACCCTGACATTGATGAGATGCCCATGGTACCTGCCAACAAAGCAGTTCAGGCACCAAAACCTTCACTTACACCTGAGGAACTGAAAGCCAAACAGCAAGAGCTAAGGGAGAAGGCTCGCAAGAAGAAAGAGGAGGAGGAAAAGAAAATGGAAAAAGAAAGAGAAAAAGAGAGGATTCGAGTGGGCAAAGAGCTTTTAGAAGCAAAGCGGATTGAAGAAGAGAATGAAAGAAAACGGCTGTTGGCCTTGAGGAAAGCTGAGAAAGAGGAGGAGAGAAAAGCTAGAGAGAAAATCAAGCAGAAACTGGAAGAAGATAAGGCAGAAAGAAGGCGGAAACTTGGATTGCCTCCAGAAGAGCCTAGTACTCAGAAAGCACCTGCTGTTGTGGAAGAGAAAAAGGTATATCTTGTCTGTATGCAGCTTTATATTCTTGGTTCCAGACATTATTTTAGAAGAAATCCCTTGGTGCAGAGCTCATTGCCAGTTAGGCCTGCCACAAAAACAGAGCAAATGAGAGAATGCTTGCGTTCTCTCAAGCAAACTCACAAGGACGAAGATGCCAGAGTGAAGAAAGCATTCCAAACTCTTCTGACTTATGTAGGGAATGTTGCCAGAAGTCCTAATGAGGAGAAGTTCAGAAAAATTAGACTTAATAACCAAACATTTCAGGAAAGAGTTGGTTCCCTGAAGGGTGGAGTTGAGTTCCTTGAACTGTGTGGGTTCGAGAAAATTGAAGGTGGGGAATTCTTATTTCTGCCAAGGGAGAAGATGGACGCAGTAGTCCTGAACTCAGCAGGTTCTGAATTGGATTCTGCAATCAAAAATCCCTTTTTTGGAGTTCTTTAG | 1305 | 0.4467 | MSGVSLKCGDCGTLLRSVQEAQEHAELTSHSDFSESIEAVLNLVCTVCGKPCRSKTESDLHTKRTGHTDFEDKTMEAVKPLSLEAPMADTSMEDAATATTCEPQEMVVPEVNKSLLEELESMGFTTPRATRALHYSSNASVEAAVNWLVEHENDPDIDEMPMVPANKAVQAPKPSLTPEELKAKQQELREKARKKKEEEEKKMEKEREKERIRVGKELLEAKRIEEENERKRLLALRKAEKEEERKAREKIKQKLEEDKAERRRKLGLPPEEPSTQKAPAVVEEKKVYLVCMQLYILGSRHYFRRNPLVQSSLPVRPATKTEQMRECLRSLKQTHKDEDARVKKAFQTLLTYVGNVARSPNEEKFRKIRLNNQTFQERVGSLKGGVEFLELCGFEKIEGGEFLFLPREKMDAVVLNSAGSELDSAIKNPFFGVL* | 435 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pte10g01222 | 434 | CDD | PUB_UBA_plant | 328 | 434 | - | - | |
| Pte10g01222 | 434 | PANTHER | F13M7.16 PROTEIN | 1 | 434 | - | - | |
| Pte10g01222 | 434 | SMART | uba_6 | 112 | 150 | IPR015940 | - | |
| Pte10g01222 | 434 | MobiDBLite | consensus disorder prediction | 180 | 210 | - | - | |
| Pte10g01222 | 434 | Pfam | PUB domain | 341 | 413 | IPR018997 | - | |
| Pte10g01222 | 434 | MobiDBLite | consensus disorder prediction | 169 | 210 | - | - | |
| Pte10g01222 | 434 | SUPERFAMILY | PUG domain-like | 320 | 430 | IPR036339 | - | |
| Pte10g01222 | 434 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 8 | 30 | IPR013087 | - | |
| Pte10g01222 | 434 | Coils | Coil | 178 | 261 | - | - | |
| Pte10g01222 | 434 | Gene3D | - | 88 | 166 | - | - | |
| Pte10g01222 | 434 | ProSiteProfiles | Ubiquitin-associated domain (UBA) profile. | 110 | 151 | IPR015940 | - | |
| Pte10g01222 | 434 | Gene3D | - | 326 | 424 | - | - | |
| Pte10g01222 | 434 | MobiDBLite | consensus disorder prediction | 251 | 279 | - | - | |
| Pte10g01222 | 434 | SUPERFAMILY | UBA-like | 102 | 164 | IPR009060 | GO:0005515 | |
| Pte10g01222 | 434 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 45 | 67 | IPR013087 | - | |
| Pte10g01222 | 434 | CDD | UBA_PUB_plant | 110 | 158 | - | - | |
| Pte10g01222 | 434 | SMART | PGNneu | 344 | 407 | - | - | |
| Pte10g01222 | 434 | MobiDBLite | consensus disorder prediction | 251 | 270 | - | - | |
| Pte10g01222 | 434 | Pfam | UBA/TS-N domain | 114 | 148 | IPR015940 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pte10g01222 | Pte-Chr10 | 30078745 | 30084585 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pte10g01222 | 92 | 435 | C2H2 Transcription Factor Family | AT1G04850 | 70.605 | 2.98e-145 | 415 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pte10g01222 | K24348 | - | csv:101215434 | 570.466 |