Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g01212 ATGGACTCTTCTTCTTCTTCTTCAGCTTCAGGACCTTCTCCTAACTCTCAGCGCCATAACTGGCTTGCTTTCTCCCTCTCAAATCACTTCCATTCTTCAGCCTCACCCCCACACGCACAACCTGATCTCTCTCTCTTCCACTCTTTCCCTTCCTCAGATGGTGCACATGAACTTGGAGATGCTACCACCAGTGCCACCACAACTGCAACCACCGCAAGTCTTGGTAGTGCAACCGAGCTGTCAATGTTTAACACTATACCCAAACTCGAAGATTTTCTTGGCGTCTCTACAACGACGACGACGACTTCGGCTGTCACTGCACAGCTCTCACACTTCTCCACTGATTCTACTCTCGCTTTATCGGACGCCGACATATACGATTCTGAGCTCAAAACCTTAGCTGCTAGCTTTCTTCGCGGTTATACTTCGGTGGAGCAACCTCAAACACAAAAACCATTGCCGTTACCATTACCACCACCGCCAGCAGCAGCGGGGTCAACCTCATCTCGCCTTCCTCTTCGGAAAACCGCTGATACCTTTGGCCAACGCACTTCCATTTACCGCGGCGTGACTCGGCATAGGTGGACAGGCAGATACGAAGCACATCTTTGGGATAACAGCTGTAGGAGGGAAGGGCAAAGTAGGAAAGGCAGACAAGTTTACTTGGGAGGTTATGACAAGGAAGACAAGGCAGCTAGAGCATATGATCTTGCAGCTCTCAAGTACTGGGGTCCGACCACTACCACAAATTTTCCTATTTCAAACTATGAGAAGGAGTTGGATGAGATGAAGAACATGACAAGGCAAGAATTTGTTGCTTCTCTGAGAAGGAAAAGTAGTGGCTTTTCTAGAGGAGCATCCATATACAGAGGGGTAACAAGGCATCATCAACATGGTCGTTGGCAAGCAAGAATAGGAAGAGTTGCTGGTAACAAAGACCTCTACCTTGGTACATTCAGCACCCAAGAGGAAGCTGCTGAGGCCTATGATATTGCTGCCATTAAGTTCAGAGGACTCAACGCTGTTACCAACTTTGATATTAGCCGCTATGATGTGAAAAGCATCGCCAACAGCAACCTTCCAATTGGTGGTCTGTCTAATAAATCCAAAAATCCTTCAGATTCTGACTGCAGGAGCCAGGAAGGCAGCAGATCAGATGAGGCGAAACATCTGTCTTCTTCCTCCGTTACCTTTGCTTCCCACCCTTCATGCTCTACCCTCAGCTTTGCTTTACCTATCAAACAAGACCCTTCAGATTACTGGTCTGTCCTCGGATACCAAAACTCTTCTCTCAACAATGCCGAGAACTCTACCAGTGTTGCACAAACTCTCTTACAGTCTTCAAGTCCCAATGTGTCAGTACCTTTCACCATGGAGTACTCAGTTGGCAGTGAAAGCAACAACAATGGTGGATATCTAAACAATGGAGGAGGCATGTTTATTCAGCAGCAACAGAAAACGAGTAGCAGCACTGCAAGTCCTCCCATCTTTGCCACACCTATCGCTACTCTGAGCAGTAATATTAATGGTTACGAGGTGTCTTCAGGTTATGGCAATTGGATAGGTCCAAGCTTCCACACATTCCAACCCCACGTAAAACCCAGTCTCTTTCAAACACCGATTTTTGGCATGGAGTGA 1638 0.4725 MDSSSSSSASGPSPNSQRHNWLAFSLSNHFHSSASPPHAQPDLSLFHSFPSSDGAHELGDATTSATTTATTASLGSATELSMFNTIPKLEDFLGVSTTTTTTSAVTAQLSHFSTDSTLALSDADIYDSELKTLAASFLRGYTSVEQPQTQKPLPLPLPPPPAAAGSTSSRLPLRKTADTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEDKAARAYDLAALKYWGPTTTTNFPISNYEKELDEMKNMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDISRYDVKSIANSNLPIGGLSNKSKNPSDSDCRSQEGSRSDEAKHLSSSSVTFASHPSCSTLSFALPIKQDPSDYWSVLGYQNSSLNNAENSTSVAQTLLQSSSPNVSVPFTMEYSVGSESNNNGGYLNNGGGMFIQQQQKTSSSTASPPIFATPIATLSSNINGYEVSSGYGNWIGPSFHTFQPHVKPSLFQTPIFGME* 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g01212 545 ProSiteProfiles AP2/ERF domain profile. 288 346 IPR001471 GO:0003700|GO:0006355
Pte10g01212 545 CDD AP2 185 254 IPR001471 GO:0003700|GO:0006355
Pte10g01212 545 MobiDBLite consensus disorder prediction 361 391 - -
Pte10g01212 545 ProSiteProfiles AP2/ERF domain profile. 186 252 IPR001471 GO:0003700|GO:0006355
Pte10g01212 545 Pfam AP2 domain 288 338 IPR001471 GO:0003700|GO:0006355
Pte10g01212 545 Pfam AP2 domain 186 244 IPR001471 GO:0003700|GO:0006355
Pte10g01212 545 Gene3D AP2/ERF domain 186 254 IPR036955 GO:0003700|GO:0006355
Pte10g01212 545 Gene3D AP2/ERF domain 288 348 IPR036955 GO:0003700|GO:0006355
Pte10g01212 545 SUPERFAMILY DNA-binding domain 185 254 IPR016177 GO:0003677
Pte10g01212 545 PRINTS Ethylene responsive element binding protein signature 187 198 IPR001471 GO:0003700|GO:0006355
Pte10g01212 545 PRINTS Ethylene responsive element binding protein signature 328 348 IPR001471 GO:0003700|GO:0006355
Pte10g01212 545 FunFam AP2-like ethylene-responsive transcription factor ANT 185 254 - -
Pte10g01212 545 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 87 435 - -
Pte10g01212 545 FunFam AP2-like ethylene-responsive transcription factor 287 348 - -
Pte10g01212 545 SMART rav1_2 288 352 IPR001471 GO:0003700|GO:0006355
Pte10g01212 545 SMART rav1_2 186 258 IPR001471 GO:0003700|GO:0006355
Pte10g01212 545 MobiDBLite consensus disorder prediction 151 165 - -
Pte10g01212 545 MobiDBLite consensus disorder prediction 374 388 - -
Pte10g01212 545 MobiDBLite consensus disorder prediction 145 170 - -
Pte10g01212 545 CDD AP2 287 348 IPR001471 GO:0003700|GO:0006355
Pte10g01212 545 SUPERFAMILY DNA-binding domain 287 348 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g01212 Pte-Chr10 30019855 30023667 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g01212 112 546 AP2-EREBP Transcription Factor Family AT5G57390 56.923 3.65e-153 444
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Pte10g01212 AP2 2.7e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g01212 K09285 - cave:132190323 634.409