Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g01185 ATGGTCATAAAATATGTTCGGCCCATAGATTTCTTTCTCACTTTGAATCAGATCCTTCGTATGAAAGGATTGAGGACAACCTTTTCAAATCCTTACTGGTTTGTGCGACCTCTCAAAATATCTCAACAATTTCTCTCGGCACTCAGACCAATAACGTTTGCTGCTCCACGTCCCATGCCTATTCCTTGTCAACGCCACAACCACCATGTCACCTGTACGAGCACCGCCACCGGTGATACCCGCCAAACCACCCAATCCCATCTTCAATTATCTCCAAAACAAAACACAAAGTTCCTTTCTTCCCTTCTCAAACCCATAATCATGATACTACTCACCTCTCTCTTCTTCCTCTTTTTGGGTTTTGCTGCTATTATCCTTATTCACCTTTGCCTCGTCGGTGGCATCTTCCACCGCCTTCGAATCCGAGAGAACAGCACTCCTCAATTGGACAATTCCTCTAATGGGTTAACGCCTAATGAGCTGAAGAGGCTTCCCCAGTTTAGGTTCGCTAAAGGGGTTGACGCCAGATCGGAAACACACTGTGTGGTCTGCTTGGATGGCTTCAGAATAGACCAAACGTGTAGAAAGCTCCCAGGATGTGGTCACGTGTTTCATAGGAAGTGTGTCGATGCGTGGCTTCTCAAGGTGGCTGCTTGTCCAATCTGCAGAACGCCTGTACGATTGAATGCAGAGAAAGTAGGTTTTGCAATGCCTGCGGAGCAATTGAGCAGGACGATAAGCAGCTGCGAGAACTGGTAG 759 0.4704 MVIKYVRPIDFFLTLNQILRMKGLRTTFSNPYWFVRPLKISQQFLSALRPITFAAPRPMPIPCQRHNHHVTCTSTATGDTRQTTQSHLQLSPKQNTKFLSSLLKPIIMILLTSLFFLFLGFAAIILIHLCLVGGIFHRLRIRENSTPQLDNSSNGLTPNELKRLPQFRFAKGVDARSETHCVVCLDGFRIDQTCRKLPGCGHVFHRKCVDAWLLKVAACPICRTPVRLNAEKVGFAMPAEQLSRTISSCENW* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g01185 252 CDD RING-H2_PA-TM-RING 180 223 - -
Pte10g01185 252 SMART ring_2 181 222 IPR001841 -
Pte10g01185 252 Pfam Ring finger domain 180 223 IPR001841 -
Pte10g01185 252 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 77 232 - -
Pte10g01185 252 ProSiteProfiles Zinc finger RING-type profile. 181 223 IPR001841 -
Pte10g01185 252 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 156 231 IPR013083 -
Pte10g01185 252 SUPERFAMILY RING/U-box 173 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g01185 Pte-Chr10 29687068 29688505 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g01185 93 231 C3H Transcription Factor Family AT2G18670 46.429 1.64e-32 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g01185 - - qsa:O6P43_002922 177.178