Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g01182 ATGGCAGTTGTCGTCAGCCTTCGAGTTCTCATGTTGGCATCCATGGCTGTTACCCTGATCTCAGCAGCTTATGCTGATCAAGGAACTGCGACCTTTTATACACCACCTTACACTCCTTCTTCATGCTATGGGTTTCAAGACAATGGTGTGATGATAGCTGCAGCAAGCGATGCTATATGGAACAATAGGGCAGCATGTGGAAGAATGTATAGAGTTACATGCCTAAGTGGCACAAACTCTGTTCCAAATGCATGCAAAGGTGGCAGTGTCGTTGTGAAAATTGTTGATTATTGTCCTCCTGGATGCCGTGCCACCATTGATTTATCTCAGGAAGCATTTGCTGCCATTGCTAACCCTGATGCTGGCAAGATCAATATTCGGTTTGATCAGTACGTAATTAATTGGCTAAGCAGTTGA 417 0.446 MAVVVSLRVLMLASMAVTLISAAYADQGTATFYTPPYTPSSCYGFQDNGVMIAAASDAIWNNRAACGRMYRVTCLSGTNSVPNACKGGSVVVKIVDYCPPGCRATIDLSQEAFAAIANPDAGKINIRFDQYVINWLSS* 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g01182 138 SMART dpbb_1 52 128 IPR007112 -
Pte10g01182 138 CDD DPBB_EG45-like 26 128 - -
Pte10g01182 138 Gene3D - 23 131 IPR036908 -
Pte10g01182 138 SUPERFAMILY Barwin-like endoglucanases 16 130 IPR036908 -
Pte10g01182 138 FunFam Barwin-related endoglucanase 25 130 - -
Pte10g01182 138 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 28 130 IPR007112 -
Pte10g01182 138 Pfam Lytic transglycolase 53 128 IPR009009 -
Pte10g01182 138 PANTHER EG45-LIKE DOMAIN CONTAINING PROTEIN 1-RELATED 5 130 IPR044206 GO:0009627|GO:0048046
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g01182 Pte-Chr10 29659025 29660028 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g01182 46 130 Expansin Gene Family AT5G39310 30.208 1.08e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g01182 - - qsa:O6P43_002923 205.682