Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g01165 ATGGTTTTGATAGAAGAGTCCAAGGAGAAAAACGACCATCCTCTTCCGAAACCTGTACCAGAAACATCAAAATCTCTCCCTATGACACCCGATTCTCACAAAGACGCTGCCTCCGATGGGTATGAAACTGCAAGTGACGCAGAACTTGACACCGAAGATAACGATCACGGAGATAAAAACAAAGAGCAAAAGCCACCGCAACAAGAGAGCGTTACTTTGAAAAGTGAGTGTCCGGGGGATATTGTCAGTGATGAGGAAATCGAAAAGAAAAGATTAGCCCTAGCCAATGATGCAAAAGTTGAAGGCAATAAACACTTTGGAAGCGGACAGTACGAGGAGGCATTGTCAAAATATGAGCTTGCCTTACAAGTTGCACCTGAGATGCCTGCTTCTGTTGAGTTACGTTCAATATGCCACTCAAACCGTGGCATATGCTTTCTGAAACTGGGACTGTATGAGGAGACTGTGAAAGAATGCACAAAAGCTTTGGAATTGAATCCTTCTTACGTCAAAGCTTTGGTGAGAAGAGGAGAGGCTCAAGAAAAGCGTGAACATTTTGATGAGGCCATTGCTGATATGAAAAAAATCTTAGAAATTGACCCTTCAAATGCTCAAGCTATGAAAACTATTCGGCGTTTGCAGCCCCTGGCTGACGAAAAGAGGGAAAAGATGAAGGAAGAAATGATTGGAAAACTGAAAGAGCTGGGGAATTCTGTGCTGGGCCGATTTGGGATGAGCGTTGACAACTTCAAAGCTGTTAAAGATCCAAAAACGGGTTCCTATTCAGTTTCGTTCCAAAAATGA 804 0.4316 MVLIEESKEKNDHPLPKPVPETSKSLPMTPDSHKDAASDGYETASDAELDTEDNDHGDKNKEQKPPQQESVTLKSECPGDIVSDEEIEKKRLALANDAKVEGNKHFGSGQYEEALSKYELALQVAPEMPASVELRSICHSNRGICFLKLGLYEETVKECTKALELNPSYVKALVRRGEAQEKREHFDEAIADMKKILEIDPSNAQAMKTIRRLQPLADEKREKMKEEMIGKLKELGNSVLGRFGMSVDNFKAVKDPKTGSYSVSFQK* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g01165 267 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 1 12 267 - -
Pte10g01165 267 ProSiteProfiles TPR repeat profile. 95 128 IPR019734 GO:0005515
Pte10g01165 267 ProSiteProfiles TPR repeat profile. 136 169 IPR019734 GO:0005515
Pte10g01165 267 MobiDBLite consensus disorder prediction 1 17 - -
Pte10g01165 267 MobiDBLite consensus disorder prediction 1 80 - -
Pte10g01165 267 MobiDBLite consensus disorder prediction 50 65 - -
Pte10g01165 267 Gene3D Tetratricopeptide repeat domain 84 228 IPR011990 GO:0005515
Pte10g01165 267 ProSiteProfiles TPR repeat profile. 170 203 IPR019734 GO:0005515
Pte10g01165 267 SMART tpr_5 136 169 IPR019734 GO:0005515
Pte10g01165 267 SMART tpr_5 95 128 IPR019734 GO:0005515
Pte10g01165 267 SMART tpr_5 170 203 IPR019734 GO:0005515
Pte10g01165 267 SUPERFAMILY TPR-like 95 223 IPR011990 GO:0005515
Pte10g01165 267 Pfam Tetratricopeptide repeat 171 203 IPR013105 -
Pte10g01165 267 Pfam Tetratricopeptide repeat 138 169 IPR001440 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g01165 Pte-Chr10 29328890 29332878 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g01165 80 226 Calmodulin-binding Proteins AT3G25230 36.774 1.70e-15 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g01165 K24926 - twl:120005124 336.265