Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g01150 ATGTCTTCCTCTGCTGGTCTCTCAGATTCCTCTTCCAGACACTGTACATATAGCCGAAAGCAAAAATCCCTTGGCCTTTTGTGCACCAATTTCTTGAGCTTGTACAATCGGGAAGGCGTCCACTTGATTGGCCTCGATGACGCAGCTGCTCGATTAGGTGTTGAAAGGCGCCGGATCTATGACATTGTTAACGTCCTAGAGAGTGTTGGGGTCCTTGCTCGGAAAGCCAAGAATCAGTATACATGGAAAGGGTTTCGAGCGATTCCTGCGGCTTTAGAAGAGCTTAAGGAGGAGGGCATGAGGGATACATGTTCTCTGTTTGACGGCGGCGATGACAATGCAAAGGTTTCTGACGACGAGGAAGACAATGAAATCTTATCGGTTCCTAGTCAAGGAAGTCAAAGCGAAAAGCACATCCCTGGCCCTACGGCTGCTAATAAATCTATCAAATCTGATAACAGGAGGGAAAAGTCACTTGCTCTTCTTACTCAGAATTTTGTCAAGCTCTTTGTCTGCTCTAAAGTAGACGTGATTTCTCTTGATGAAGCTGCAAAGTTGCTGCTGGGAGATGCGCATAATTTATCCATTATGAGAACCAAAGTTAGACGTTTATACGACATTGCAAATGTGCTGTCCTCAATGAATCTGATTGAAAAGACTCATACACCAGACACCAGGAAGCCAGCATTCAGGTGGCTGGGTTTAAATGCAAAGTCAAGAAGTGAACCTCTTGTCAATTTTAACACTAGTGAATCCCGGAAAAGATTGTTTGGAACTGATGTCACTAACATCAGTTTTAAGAAGAACAAAGTCGATCTATTGTTTGAAAGAGAGTTACGCATGAAGAAACAGAATAAGCGGGAAACTCAGAGCTATCTTCAACCTGACAAAAACATTTTAAACCAAGAATCGATACAATGTTCAAAGGGCTATGAGTTTGGTCCTTTTGCTCCAGTTTCAACACCCAAAGTTAGTGCATATGATAACAAAACTACGAAACGGGTACATGATTTGAACAAGCTAGCTGCTTATCGTCCGCAGTATCAAAACCAAGGTAAAGGTTCATACCCTCCGGAGGGGTGGGTTGGCAAAGTCAAAGTTGCGAATTTTTTCTACGTGTTTATCTTAAGTCACTGCAATCAAAAGTTAAAATAG 1155 0.426 MSSSAGLSDSSSRHCTYSRKQKSLGLLCTNFLSLYNREGVHLIGLDDAAARLGVERRRIYDIVNVLESVGVLARKAKNQYTWKGFRAIPAALEELKEEGMRDTCSLFDGGDDNAKVSDDEEDNEILSVPSQGSQSEKHIPGPTAANKSIKSDNRREKSLALLTQNFVKLFVCSKVDVISLDEAAKLLLGDAHNLSIMRTKVRRLYDIANVLSSMNLIEKTHTPDTRKPAFRWLGLNAKSRSEPLVNFNTSESRKRLFGTDVTNISFKKNKVDLLFERELRMKKQNKRETQSYLQPDKNILNQESIQCSKGYEFGPFAPVSTPKVSAYDNKTTKRVHDLNKLAAYRPQYQNQGKGSYPPEGWVGKVKVANFFYVFILSHCNQKLK* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g01150 384 FunFam E2F transcription factor-like E2FE 149 236 - -
Pte10g01150 384 SMART E2F_TDP_2 154 234 IPR003316 GO:0005667|GO:0006355
Pte10g01150 384 SMART E2F_TDP_2 19 84 IPR003316 GO:0005667|GO:0006355
Pte10g01150 384 Gene3D - 149 236 IPR036388 -
Pte10g01150 384 Gene3D - 14 86 IPR036388 -
Pte10g01150 384 MobiDBLite consensus disorder prediction 108 152 - -
Pte10g01150 384 MobiDBLite consensus disorder prediction 126 141 - -
Pte10g01150 384 SUPERFAMILY "Winged helix" DNA-binding domain 18 82 IPR036390 -
Pte10g01150 384 SUPERFAMILY "Winged helix" DNA-binding domain 156 235 IPR036390 -
Pte10g01150 384 Pfam E2F/DP family winged-helix DNA-binding domain 156 234 IPR003316 GO:0005667|GO:0006355
Pte10g01150 384 Pfam E2F/DP family winged-helix DNA-binding domain 20 84 IPR003316 GO:0005667|GO:0006355
Pte10g01150 384 FunFam E2F transcription factor 8 14 86 - -
Pte10g01150 384 PANTHER TRANSCRIPTION FACTOR E2F 12 349 IPR015633 GO:0000978|GO:0006357
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g01150 Pte-Chr10 29066675 29070145 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g01150 14 351 E2F-DP Transcription Factor Family AT3G48160 59.659 1.95e-124 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Pte10g01150 E2F_TDP 1.3e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g01150 K09391 - qsa:O6P43_030916 463.766