Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g01145 ATGGTGTGTCTTAAGTATGGGAGCAATGACACTTGTAGTTTTCCTGAAAGTGTCTGTACTGAGACTATCTTTGACCAGGAAACTCCAGAGGTTCAGAGTGTGGATCCTTGGACTACTATTCTTAATGATGGCTTGCAAAGTCAGGACAGTCTTGGAACATGGATAAATAATATCATTGTAGAATCTCCTTGTTGTGCAGAGACAACCCTTGAACCCTCAGTAGCCTCCGACAATGGCACTTTCTCCTCCCTGGGGATAGAACGTTTTCAACTTTCTCTGCCAGAACAAATATTTAATGTGACGGACATCTCACCAGTGTGGGCACCCTCAACTGAGAAAACAAAGATTTTGATCTCAGGTCTTTTCCATGAAGAATATTTAGATCTTTCAAAGTCAGATTTATTTTGTGTTTGTGGAGATGAACACGTTCCTGTAGAAACTGTACAAGTCGGGGTATATCGTTGTGTACTGCCGCCTCATCCTCCTGGATTTGTCAATTTATATTTGAGCTTAGATTGCCATAAGCCCATAAGCAAAGTTCTGAATTTTGAGTATCGAACCCCTGTAATGCTTGATCCCTTAACATCTGTAGAAGACAGTACCAAGTGGGATGATTTCCGACTGCAGATGAGGCTTGCTAAGTTGGTGTTCACCAAATCCAAGCACCTCGATATTATGTCTACAAACTTGTCATCTACTGCAATTGAGAAGGCTAGGAAGGTTGCTCTGAGAACCGCGTATATTTCCAATCGATGGGATAGCTTCATGAATTCAACAGTAGAGCGCAAAATTTCACTTTTACAAGCAAAAGACGCTTTCTTTGAGCTTACCATGAAAAACAGACTAAAGGAGTGGCTACTGGAACGCATTGCATTAGATTGCAATATAACTGAATACGATTCTCAAGGTCAAGGAGTGATCCATCTGTGTGCAATTCTGGGATATACATGGGCTATCACTCTCTACACATGGTCAGGCTTCTCTCTGGATTTCCGTGATAAACATGGATGGACAGCTCTGCACTGGGCAGCATATTTGGGAAGGGAGAAAATGGTTGCAGTTTTATTGTCAGCTGGCGCAAAGCCAAACTTAGTCACTGATCCCACTTCCCGAAACCCCGGAGGATATACTGCTGCTGATCTTGCACATATGAAGGGTTATGATGGCTTAGCAGCCTACCTTTCTGAGAAAGCGTTGGTTGAACAGTTCAAGGACATGAGTGTAGCTGGAAATATAAGTGGTACACTGAAAACCAGCACCACTTACACAGTAGATTCATCATATCTCACTGAGGATGAATTGTTTCTGAAGGACACATTAGCGGCTTATCGAACAGCTGCTGAGGCAGCAGGACGCATACAATCTGCATTTAGAGAGCGTTCTTTCAGATTACGAGCTAAAGTTGTTGAGTTTTTGAAACCCGAGGATGAGGCACGCAGTATAGTTGCTGCAATGAAGATTCAACATGCCTTCCGCAAATATGAGAGTAGGAAAATGATGGCAGCTGCTGTCCATATTCAGTATAGGTTCCGCTCATGGAAGCTTCGTAGAGAGTTCCTCAACATGCGTCGGCAGGCCATCAAAATTCAGGCCGCCTTTCGGGCTTTCCAAGTGCGGAAGCAGTACCGAAAAATACTGTGGTCAGTCGGAGTGCTTGAGAAAGTTATTCTGCGCTGGCGTTTAAAGAGAAAAGGTCTTCGAGGTCTGCAGGTTAAAACTGCTGCAGTTGCTGATGATCAGAAACATGAAAGTGATGTGGAGGAAGATTTCTATAGGACTAGCCGAAAACAAGCTGAAGATCGTGTTGAAAGATCTGTGGTACGAGTGCAGGCTATGTTCCGCTCAAGAAAGGCTCAACAGGAGTATAGGAGAATGAAGCTTGCTCACAATCAGCTTAAATATGATGAACTCATTGATCCTGATATGGAGATCGAAAGTTGTTGA 1944 0.4336 MVCLKYGSNDTCSFPESVCTETIFDQETPEVQSVDPWTTILNDGLQSQDSLGTWINNIIVESPCCAETTLEPSVASDNGTFSSLGIERFQLSLPEQIFNVTDISPVWAPSTEKTKILISGLFHEEYLDLSKSDLFCVCGDEHVPVETVQVGVYRCVLPPHPPGFVNLYLSLDCHKPISKVLNFEYRTPVMLDPLTSVEDSTKWDDFRLQMRLAKLVFTKSKHLDIMSTNLSSTAIEKARKVALRTAYISNRWDSFMNSTVERKISLLQAKDAFFELTMKNRLKEWLLERIALDCNITEYDSQGQGVIHLCAILGYTWAITLYTWSGFSLDFRDKHGWTALHWAAYLGREKMVAVLLSAGAKPNLVTDPTSRNPGGYTAADLAHMKGYDGLAAYLSEKALVEQFKDMSVAGNISGTLKTSTTYTVDSSYLTEDELFLKDTLAAYRTAAEAAGRIQSAFRERSFRLRAKVVEFLKPEDEARSIVAAMKIQHAFRKYESRKMMAAAVHIQYRFRSWKLRREFLNMRRQAIKIQAAFRAFQVRKQYRKILWSVGVLEKVILRWRLKRKGLRGLQVKTAAVADDQKHESDVEEDFYRTSRKQAEDRVERSVVRVQAMFRSRKAQQEYRRMKLAHNQLKYDELIDPDMEIESC* 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g01145 647 SMART ANK_2a 335 364 IPR002110 GO:0005515
Pte10g01145 647 Pfam IQ calmodulin-binding motif 501 519 IPR000048 GO:0005515
Pte10g01145 647 Pfam IQ calmodulin-binding motif 524 543 IPR000048 GO:0005515
Pte10g01145 647 Gene3D - 498 546 - -
Pte10g01145 647 ProSiteProfiles Ankyrin repeat region circular profile. 335 363 - -
Pte10g01145 647 ProSiteProfiles IQ motif profile. 603 631 IPR000048 GO:0005515
Pte10g01145 647 Pfam IPT/TIG domain 100 185 IPR002909 -
Pte10g01145 647 SUPERFAMILY Ankyrin repeat 284 397 IPR036770 -
Pte10g01145 647 ProSiteProfiles IQ motif profile. 522 546 IPR000048 GO:0005515
Pte10g01145 647 Gene3D - 267 405 IPR036770 -
Pte10g01145 647 SMART iq_5 521 543 IPR000048 GO:0005515
Pte10g01145 647 SMART iq_5 498 520 IPR000048 GO:0005515
Pte10g01145 647 SMART iq_5 601 623 IPR000048 GO:0005515
Pte10g01145 647 Gene3D Immunoglobulins 94 189 IPR013783 -
Pte10g01145 647 Pfam Ankyrin repeats (3 copies) 284 364 IPR002110 GO:0005515
Pte10g01145 647 ProSiteProfiles Ankyrin repeat profile. 335 367 IPR002110 GO:0005515
Pte10g01145 647 ProSiteProfiles IQ motif profile. 499 528 IPR000048 GO:0005515
Pte10g01145 647 SUPERFAMILY E set domains 99 186 IPR014756 -
Pte10g01145 647 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 33 631 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g01145 Pte-Chr10 28979462 28982187 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g01145 39 639 CAMTA Transcription Factor Family AT3G16940 56.507 0.0 682
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g01145 K21596 - qsa:O6P43_021827 821.231