Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g01135 ATGTCGTTGAAACCAAGTGCCAGGACTGAGGTTCGACGGAACAGATACAAGGTTGCCGTAGATGCGGACGAGGGTCGCCGGCGGCGAGAGGACAATATGGTTGAGATCCGCAAGAACAAACGTGAAGAGAGCTTGCTGAAGAAGCGTCGCGAAGGGCTTCAAGCTCAGCAACAGTTTTCCACTCTTCAGACTTCGACCGTTGAGAAAAAGTTGGAGAGTCTTCCTTCAATGGTCGCTGGTGTATTTTCTGATAATAATAATCTGCAACTGGAAGCGACTACACAGTTTCGGAAATTGCTTTCAATTGAGCGTAGCCCTCCTATTGAGGAAGTCATTCAATCCGGGGTTGTTCCAAAATTTGTAGAGTTTCTTGTGAGGGAGGATTTTCCTCAGCTTCAGTTCGAGGCTGCTTGGGCTCTGACAAATATAGCATCAGGGACCTCTGAGAACACCAAGGTCGTTATTGATCATGGAGCAGTACCTATTTTTGTGAAGCTACTTAGTTCTCCTAGTGATGATGTGCGGGAGCAGGCTGTATGGGCCTTGGGAAATGTTGCTGGTGACTCGCCTAGGTGTCGTGATCTTGTACTCAGCCATGGAGCCTTGATCCCTTTGTTAGCTCAATTGAATGAGCATGCTAAGCTTTCAATGCTAAGAAATGCCACGTGGACCCTATCAAATTTCTGCCGGGGCAAGCCGCAGCCTGCATTCGAACAGGTGAGACCAGCTCTGCCAGCTCTTGAGCGTCTAGTACACTCAAATGATGAGGAAGTTCTGACAGATGCTTGTTGGGCACTTTCATACCTTTCTGATGGTACAAATGACAAAATTCAAGCTGTTATTGAGGCAGGTGTATGCCCCAGATTGGTGCAGCTTCTCATGCACCCATCTCCTGCTGTGCTCATCCCTGCTCTCCGCACAGTGGGAAACATTGTGACTGGAGATGACATGCAGACTCAGTGTATAATCAATCACTCTGCGCTTCCATGCCTTTTGAGCCTCTTGACACATAACCACAAAAAGAGCATCAAGAAAGAAGCTTGTTGGACTATATCGAACATCACAGCTGGCAATAGAGATCAGATACAGACTGTTATTGAAGCTGGTTTGATTGCTCCTCTTGTAAATCTTCTCCAAAATGCTGAGTTTGACATAAAGAAAGAGGCTGCTTGGGCAATCTCAAATGCCACCTCTGGTGGCAGTCATGACCAAATCAAGTACTTGGTCAGTCAAGGCTGCATAAAGCCTCTATGTGATCTCCTAGTATGCCCTGACCCAAGGATTGTCACTGTTTGTTTAGAAGGATTAGAAAATATTCTCAAGGTCGGGGAAGCTGAGAAGAATCTTACTAAAACTGAGGTCAACTTGTTTGCTCAGATGATAGATGATGCTGAGGGGTTAGAGAAGATTGAAAATCTGCAGAGTCATGATAACAATGAGATATATGAGAAAGCTGTTAAAATTCTTGAAACATACTGGTTAGAAGAGGAGGATGAGACCTTGCCACCTGGTGATGGTGCGCAACCTGGTTTCAACTTTGGAGGGAACGAGCTTCCTGTTCCAAGTGGTGGATTCAACTTCAGTTGA 1587 0.4594 MSLKPSARTEVRRNRYKVAVDADEGRRRREDNMVEIRKNKREESLLKKRREGLQAQQQFSTLQTSTVEKKLESLPSMVAGVFSDNNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPKFVEFLVREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSHGALIPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPAFEQVRPALPALERLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVQLLMHPSPAVLIPALRTVGNIVTGDDMQTQCIINHSALPCLLSLLTHNHKKSIKKEACWTISNITAGNRDQIQTVIEAGLIAPLVNLLQNAEFDIKKEAAWAISNATSGGSHDQIKYLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLTKTEVNLFAQMIDDAEGLEKIENLQSHDNNEIYEKAVKILETYWLEEEDETLPPGDGAQPGFNFGGNELPVPSGGFNFS* 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g01135 528 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 326 369 IPR000225 GO:0005515
Pte10g01135 528 ProSiteProfiles IBB domain profile. 1 58 IPR002652 GO:0006606|GO:0061608
Pte10g01135 528 SUPERFAMILY ARM repeat 13 498 IPR016024 -
Pte10g01135 528 PIRSF Importin_alpha 2 527 IPR024931 GO:0005737|GO:0006606|GO:0061608
Pte10g01135 528 Gene3D - 72 494 IPR011989 -
Pte10g01135 528 Gene3D - 11 50 IPR036975 GO:0006606
Pte10g01135 528 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 158 200 IPR000225 GO:0005515
Pte10g01135 528 Pfam Armadillo/beta-catenin-like repeat 105 145 IPR000225 GO:0005515
Pte10g01135 528 Pfam Armadillo/beta-catenin-like repeat 402 439 IPR000225 GO:0005515
Pte10g01135 528 Pfam Armadillo/beta-catenin-like repeat 274 312 IPR000225 GO:0005515
Pte10g01135 528 Pfam Armadillo/beta-catenin-like repeat 316 356 IPR000225 GO:0005515
Pte10g01135 528 Pfam Armadillo/beta-catenin-like repeat 243 270 IPR000225 GO:0005515
Pte10g01135 528 Pfam Armadillo/beta-catenin-like repeat 189 230 IPR000225 GO:0005515
Pte10g01135 528 Pfam Armadillo/beta-catenin-like repeat 147 186 IPR000225 GO:0005515
Pte10g01135 528 Pfam Armadillo/beta-catenin-like repeat 358 397 IPR000225 GO:0005515
Pte10g01135 528 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 242 284 IPR000225 GO:0005515
Pte10g01135 528 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 115 158 IPR000225 GO:0005515
Pte10g01135 528 SMART arm_5 232 271 IPR000225 GO:0005515
Pte10g01135 528 SMART arm_5 104 145 IPR000225 GO:0005515
Pte10g01135 528 SMART arm_5 147 187 IPR000225 GO:0005515
Pte10g01135 528 SMART arm_5 273 313 IPR000225 GO:0005515
Pte10g01135 528 SMART arm_5 188 230 IPR000225 GO:0005515
Pte10g01135 528 SMART arm_5 401 441 IPR000225 GO:0005515
Pte10g01135 528 SMART arm_5 358 398 IPR000225 GO:0005515
Pte10g01135 528 SMART arm_5 315 356 IPR000225 GO:0005515
Pte10g01135 528 Pfam Atypical Arm repeat 455 501 IPR032413 -
Pte10g01135 528 MobiDBLite consensus disorder prediction 505 528 - -
Pte10g01135 528 Pfam Importin beta binding domain 12 94 IPR002652 GO:0006606|GO:0061608
Pte10g01135 528 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 369 397 IPR000225 GO:0005515
Pte10g01135 528 PANTHER IMPORTIN ALPHA 12 499 - -
Pte10g01135 528 FunFam Importin subunit alpha 72 494 - -
Pte10g01135 528 FunFam Importin subunit alpha 11 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g01135 Pte-Chr10 28823077 28828023 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g01135 130 390 U-box Gene Family AT3G46510 25.954 8.20e-13 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g01135 K15042 - gmx:100792804 976.852