Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g01129 ATGGGTTCTTCAACTATCAGAGATATTCTAACAGCGTTTAGTCCTTCTTTGGATTTCTTTGCTATCAGTGCTGGTGATGGACGAATTAAGATATGGGATGCCTTGAAGGGTCAGGTTCAATCTGAATTTGCTGACATCTCACCTTCTGATGCAATAAATGTATATCCTGGTTCTGTAAGAGGACACCTTTCAATTGACTATACATGCATGAAGTGGTTGTCTATTGAAGGAAAGAGAAAAAGGAAGCATCAATCTTCGTTGTTAGTATTGGGAACAGGCAGTGGCGATGTTTTAGCACTTGATGTGTCTGCAGGTCAATTACATTGGAGAGCTAGTGACTGCCATCCTGGAGGTGTCAATGCTATATCATCTGTTGCAGATGGATCATCCATCTACACTGCTGGTGCAGACGGGATGGTGTGTAAGATTGATTTTGTAACAGGAAATCTGTTGGAGAAGTTTAAAGCTTCTACAAAGGCAATTTCTTGCATGTCTGTATCATCAGATGGAAAGATAATAGCTACGGCATCTGCACAACTGAAAATTTCCCGCTGTTCTGATCACAAAAAGATACAGAAGTTCTCTGGCCATCCTGGACCTGTACGCTGTATGGTCTTTACTGAAGATGGAAAATATGTCCTCTCATCTGCAGTTGGTGAAAGATATATTGCATTGTGGAAGATAGATGACAACAAAAAGCAGTCAGCATGTTGCTTTCTTTCAATGGATCACCCCTCTGTCTTTCTCGATAGCAAATGCATTGGTGATAGTGGCGACAATGCTAGCGGAATAAATGTTTTGGCCATTTCAGAAACTGGAGTCTGTTACTTTTGGCATGGGAAGAATGTTGAGGAGTTACGTAACGCTAAGCCCTCAAAAGTCTCTGTATCCTTGGAGGATAGTTTATCTGGAAAATACAAGGGTGCTTTGCCTGCAATATATGCTGCAAAACTAATGGGAATTCCTAGCCCAACTACTAGCCAGCTCTTTCTTGCTTATGGCTTGTTGGTAAAACCATCATTTAAAAAACTTACAGTTCATTCTGCGTCAGATGTAAAGTTGAATGTTTCCAATGAGGGTATTCTTCTTCCAAAGAGCCACACTCTCATCAAATCTCATAAAAGTATTCTGCAAAATAGAGTCAGAGCATTAGATCGTGCAAATGCAGAAGATGCTTTACTTCCCGTTTCAAAAGTTTTTGACCCTCATGATAGGAAGGAAGCTTATGAAGGTGTCCCTTTTGGTGCTAGAAAAGGAACAGATGAATTGCTTGAAAGAAATACGAAAATGGAGGCTCTCAAGAGTGAAGATGAAATGGTTGAAGATGACAGGGAGGTTGTATGTATTGAAGAACGACTGAGATCACTAGGCATACTAAATAATGAAAACGATGTTACACCAATCACCTCTCCTTTGCTTCATGGCATTAATCTTGAGACTGATACTCCAAAAGGAAAGGTGCATTCTTTTCTTGTGGGTTGTCGGTTTTTACTTTTCTCTATTACTAATTGTAAAGCTTCTCTTCTAGAGTATCATTATTAA 1542 0.3982 MGSSTIRDILTAFSPSLDFFAISAGDGRIKIWDALKGQVQSEFADISPSDAINVYPGSVRGHLSIDYTCMKWLSIEGKRKRKHQSSLLVLGTGSGDVLALDVSAGQLHWRASDCHPGGVNAISSVADGSSIYTAGADGMVCKIDFVTGNLLEKFKASTKAISCMSVSSDGKIIATASAQLKISRCSDHKKIQKFSGHPGPVRCMVFTEDGKYVLSSAVGERYIALWKIDDNKKQSACCFLSMDHPSVFLDSKCIGDSGDNASGINVLAISETGVCYFWHGKNVEELRNAKPSKVSVSLEDSLSGKYKGALPAIYAAKLMGIPSPTTSQLFLAYGLLVKPSFKKLTVHSASDVKLNVSNEGILLPKSHTLIKSHKSILQNRVRALDRANAEDALLPVSKVFDPHDRKEAYEGVPFGARKGTDELLERNTKMEALKSEDEMVEDDREVVCIEERLRSLGILNNENDVTPITSPLLHGINLETDTPKGKVHSFLVGCRFLLFSITNCKASLLEYHY* 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g01129 513 SMART WD40_4 104 144 IPR001680 GO:0005515
Pte10g01129 513 SMART WD40_4 187 227 IPR001680 GO:0005515
Pte10g01129 513 SMART WD40_4 147 186 IPR001680 GO:0005515
Pte10g01129 513 SMART WD40_4 2 33 IPR001680 GO:0005515
Pte10g01129 513 ProSiteProfiles Trp-Asp (WD) repeats profile. 12 42 IPR001680 GO:0005515
Pte10g01129 513 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 12 245 IPR011047 -
Pte10g01129 513 Pfam WD domain, G-beta repeat 8 33 IPR001680 GO:0005515
Pte10g01129 513 Pfam WD domain, G-beta repeat 190 226 IPR001680 GO:0005515
Pte10g01129 513 Gene3D - 5 303 IPR015943 GO:0005515
Pte10g01129 513 PANTHER OS03G0300300 PROTEIN 3 484 - -
Pte10g01129 513 ProSiteProfiles Trp-Asp (WD) repeats profile. 194 236 IPR001680 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g01129 115 250 U-box Gene Family AT2G33340 28.571 1.03e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g01129 K14546 - qsa:O6P43_021795 640.188