Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g01121 ATGGGTATATATGTTTTTTTATATGACTCTCTGGAAATGGCGATGACAGCGGTGACGTTTGAGAAGCCTGAGAAGGAAATCCAAGTTGCTAATATGGATGCAAAGCCAAAAGGAAAGAGCACTCAGATGAAGAAGGGCGCCCAGAAAGCTCGTAAGAATGTTTACAGAGGAATCAGACAAAGGCCATGGGGAAAATGGGCTGCTGAGATAAGAGACCCTCACAAAGGAGTCCGAGTTTGGCTAGGGACATACAACTCAGCTGAAGAAGCAGCCAAAGCTTACGATGAAGCAGCAAAGAGGATCCGTGGTGACAAGGCCAAACTCAACTTCCCAAGCCAAAAGGCACCGCCTTGCCCTTCATCATTTCCATGTTCACCATCATCATCATCAGCTTGTTCTTCATCTCTCTCTTCTTCAACTTCAACCCTGCCTGCAGCCAAGAAACGCTGCATTAGCCTTCATTCAAATGAGGCGGTCACGGAGCTGCAGAAGGAGATGGAGCTGAAGCAGCAAATCTCCAGCTTGGAATGGTTTCTGGGGTTGGATTCAGAAGAAAGACAAGTGAACCAAGAGGTAGTGGTGAGTGGTGGAATGGTTGATGAGGCAGAGCCGGCGGACCTGTGGATGCTTGATGACCTTGTTACGCATCACCAGCAGCAGCAACATTATCGCCACCTTCGTTACTGA 687 0.4818 MGIYVFLYDSLEMAMTAVTFEKPEKEIQVANMDAKPKGKSTQMKKGAQKARKNVYRGIRQRPWGKWAAEIRDPHKGVRVWLGTYNSAEEAAKAYDEAAKRIRGDKAKLNFPSQKAPPCPSSFPCSPSSSSACSSSLSSSTSTLPAAKKRCISLHSNEAVTELQKEMELKQQISSLEWFLGLDSEERQVNQEVVVSGGMVDEAEPADLWMLDDLVTHHQQQQHYRHLRY* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g01121 228 Pfam AP2 domain 54 103 IPR001471 GO:0003700|GO:0006355
Pte10g01121 228 SMART rav1_2 54 117 IPR001471 GO:0003700|GO:0006355
Pte10g01121 228 PANTHER DNA-BINDING DOMAIN 38 154 IPR044808 GO:0003700|GO:0009873
Pte10g01121 228 MobiDBLite consensus disorder prediction 33 52 - -
Pte10g01121 228 Gene3D AP2/ERF domain 54 113 IPR036955 GO:0003700|GO:0006355
Pte10g01121 228 CDD AP2 55 111 IPR001471 GO:0003700|GO:0006355
Pte10g01121 228 ProSiteProfiles AP2/ERF domain profile. 54 111 IPR001471 GO:0003700|GO:0006355
Pte10g01121 228 FunFam Ethylene-responsive transcription factor 2 53 112 - -
Pte10g01121 228 PRINTS Ethylene responsive element binding protein signature 55 66 IPR001471 GO:0003700|GO:0006355
Pte10g01121 228 PRINTS Ethylene responsive element binding protein signature 77 93 IPR001471 GO:0003700|GO:0006355
Pte10g01121 228 SUPERFAMILY DNA-binding domain 54 112 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g01121 Pte-Chr10 28667801 28668487 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g01121 46 218 AP2-EREBP Transcription Factor Family AT3G16770 47.027 1.86e-45 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pte10g01121 AP2 8.9e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g01121 K09286 - qsa:O6P43_021786 158.688