Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g01117 ATGTGTGGCGGTGCTATCATTTCTGATTTTATTGCTGCCAAACGTAGCCGGAGATTGACTTCAGATGATCTCTGGTCAGAGCTAGACCTCGTCTCTGACCTCCTTGGCTTGGATTCAAATTCTGGCAAAGACCAGGTCCTGCTGCCTGAGCATAACCAGCTACCTCAGAACCCCAGTCACCCAGCGGTGACGTTTGAGAAGCCTGAGAAGGAAATCCAAGTTGCTAATATGGATGCAAAGCCAAAAGGAAAGAGCACTCAGATGAAGAAGGGCGCCCAGAAAGCTCGTAAGAATGTTTACAGAGGAATCAGACAAAGGCCATGGGGAAAATGGGCTGCTGAGATAAGAGACCCTCACAAAGGAGTCCGAGTTTGGCTAGGGACATACAACTCAGCTGAAGAAGCAGCCAAAGCTTACGATGAAGCAGCAAAGAGGATCCGTGGTGACAAGGCCAAACTCAACTTCCCAAGCCAAAAGGCACCGCCTTGCCCTTCATCATTTCCATGTTCACCATCATCATCATCAGCTTGTTCTTCATCTCTCTCTTCTTCAACTTCAACCCTGCCTGCAGCCAAGAAACGCTGCATTAGCCTTCATTCAAATGAGGCGGTCACGGAGCTGCAGAAGGAGATGGAGCTGAAGCAGCAAATCTCCAGCTTGGAATGGTTTCTGGGGTTGGATTCAGAAGAAAGACAAGTGAACCAAGAGGTAGTGGTGAGTGGTGGAATGGTTGATGAGGCAGAGCCGGCGGACCTGTGGATGCTTGATGACCTTGTTACGCATCACCAGCAGCAGCAACGTTATCGCCACCTTCGTTACTGA 822 0.4964 MCGGAIISDFIAAKRSRRLTSDDLWSELDLVSDLLGLDSNSGKDQVLLPEHNQLPQNPSHPAVTFEKPEKEIQVANMDAKPKGKSTQMKKGAQKARKNVYRGIRQRPWGKWAAEIRDPHKGVRVWLGTYNSAEEAAKAYDEAAKRIRGDKAKLNFPSQKAPPCPSSFPCSPSSSSACSSSLSSSTSTLPAAKKRCISLHSNEAVTELQKEMELKQQISSLEWFLGLDSEERQVNQEVVVSGGMVDEAEPADLWMLDDLVTHHQQQQRYRHLRY* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g01117 273 SUPERFAMILY DNA-binding domain 99 157 IPR016177 GO:0003677
Pte10g01117 273 PANTHER DNA-BINDING DOMAIN 69 199 IPR044808 GO:0003700|GO:0009873
Pte10g01117 273 Gene3D AP2/ERF domain 99 158 IPR036955 GO:0003700|GO:0006355
Pte10g01117 273 ProSiteProfiles AP2/ERF domain profile. 99 156 IPR001471 GO:0003700|GO:0006355
Pte10g01117 273 CDD AP2 100 156 IPR001471 GO:0003700|GO:0006355
Pte10g01117 273 FunFam Ethylene-responsive transcription factor 2 98 157 - -
Pte10g01117 273 Pfam AP2 domain 99 148 IPR001471 GO:0003700|GO:0006355
Pte10g01117 273 PRINTS Ethylene responsive element binding protein signature 122 138 IPR001471 GO:0003700|GO:0006355
Pte10g01117 273 PRINTS Ethylene responsive element binding protein signature 100 111 IPR001471 GO:0003700|GO:0006355
Pte10g01117 273 SMART rav1_2 99 162 IPR001471 GO:0003700|GO:0006355
Pte10g01117 273 MobiDBLite consensus disorder prediction 78 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g01117 Pte-Chr10 28625100 28626450 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g01117 1 263 AP2-EREBP Transcription Factor Family AT3G16770 40.357 3.69e-54 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pte10g01117 AP2 1.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g01117 K09286 - qsa:O6P43_021786 201.445