Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g01090 ATGGGAATTTCGTGGAGTAGTGGCCGGAGAAGAAACAACTACTATCAGAACCACCCTCCACCGCCTCCACCTCCTCCGTCGCGACCTTCTTTCTACAGCTACTACCCAGATGCTCACTATTTTCCTCCTCCACCTGCTCTACCAGCTGCACCTCAACCCATAGCACAACCTCACGACTATTTCTTCACCACAACGTCAAATACAACTACAACTTCTGCTCCTCATCACCCTACGCAAACCAATACTAGCTATGCTTACAATACCAATCACCCTCCTTTGCTTCCAGCTCCACCACCACCGCCACCACCTCCTCCTCCTCCTCAAACCCATTTTTACAGTGGCCACCATTCCAGCAGCTACTCTAATTCTATGATAGGTCCGTCCCATTACCATCCATATTATCTAAATCAGGCTAATACGTGGCCATCCTTTCGTCCTCCGGCTGTTCCTGCGCTCCCGCCACCGCCTTATGTCGAGCATCAAAATGCCAAGAAGGTTCGGAATGATGTGAACGTCCATAAAGATACGGTCAAGCTCGAGATAGACGAGTTCAATCCGGATCATCACTTGGTTTCTTTTGTTTTCGACGCCTTGTACGATGGCAGCATCACAATCATGTACTTTGCCAAGGAGGAGGGACAATGTAAATTTGTTCCACTGTATCCTGAAGCTTTCAAGCCAATTAGAATTCCCTTTCAGAAGGGCCTTCATCAGAAATTTATTCAACCGTCAGGATCAGGTATTGATTTGGGCTTCTTTGAGTTGGATGATCTCGCAAAACCTTCATCTTCGGAAGACGTATTTCCTCTTGTAATTTGTGCTGAAACAAGCCTGACAATTCAGCCTGTGGATGAAAGTTTATGTGATCCCATACCAGATACATCTCCTCACATGCAGATTACCCAAGCTATAATTGATAAAAACAACAGTACTGATCCATTCAGGGTCAAAGTGATAAGACAGATTTTATGGATTGAGGGAATCCGTTATGAGTTGCGCGAGTTATATGGAATAGGAAATTCATCTACAGAAGGTTTTAATATCAATGATCCTGGGAAGGAATGCGTAATTTGCATGACTGAACCAAAGGATACTGCCGTCTTACCTTGCAGGCATATGTGTATGTGCAGTGAATGTGCAAAAGAATTAAGGCTTCAATCAAATAAGTGCCCCATATGTCGTCAACCAATTGAGGAACTGATAGAGATCAAGATAAATGGTGGCGATCCATGA 1233 0.4469 MGISWSSGRRRNNYYQNHPPPPPPPPSRPSFYSYYPDAHYFPPPPALPAAPQPIAQPHDYFFTTTSNTTTTSAPHHPTQTNTSYAYNTNHPPLLPAPPPPPPPPPPPQTHFYSGHHSSSYSNSMIGPSHYHPYYLNQANTWPSFRPPAVPALPPPPYVEHQNAKKVRNDVNVHKDTVKLEIDEFNPDHHLVSFVFDALYDGSITIMYFAKEEGQCKFVPLYPEAFKPIRIPFQKGLHQKFIQPSGSGIDLGFFELDDLAKPSSSEDVFPLVICAETSLTIQPVDESLCDPIPDTSPHMQITQAIIDKNNSTDPFRVKVIRQILWIEGIRYELRELYGIGNSSTEGFNINDPGKECVICMTEPKDTAVLPCRHMCMCSECAKELRLQSNKCPICRQPIEELIEIKINGGDP* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g01090 410 MobiDBLite consensus disorder prediction 58 89 - -
Pte10g01090 410 PANTHER MAHOGUNIN 61 404 IPR045194 GO:0061630
Pte10g01090 410 SMART ring_2 355 393 IPR001841 -
Pte10g01090 410 MobiDBLite consensus disorder prediction 16 31 - -
Pte10g01090 410 MobiDBLite consensus disorder prediction 1 31 - -
Pte10g01090 410 ProSiteProfiles Zinc finger RING-type profile. 355 394 IPR001841 -
Pte10g01090 410 SUPERFAMILY RING/U-box 354 400 - -
Pte10g01090 410 SUPERFAMILY Formin homology 2 domain (FH2 domain) 97 107 - -
Pte10g01090 410 MobiDBLite consensus disorder prediction 91 110 - -
Pte10g01090 410 FunFam probable E3 ubiquitin-protein ligase LOG2 339 404 - -
Pte10g01090 410 CDD mRING-HC-C3HC5_MGRN1-like 353 394 IPR045195 -
Pte10g01090 410 Pfam Zinc finger, C3HC4 type (RING finger) 353 399 - -
Pte10g01090 410 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 340 404 IPR013083 -
Pte10g01090 410 MobiDBLite consensus disorder prediction 43 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g01090 Pte-Chr10 28180739 28185806 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g01090 126 409 C3H Transcription Factor Family AT3G06140 59.122 3.41e-115 339
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g01090 - - qsa:O6P43_021626 507.679