Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g01088 ATGGATGACGAATCTATGAAGAAACAGATTGCAGCCCTTTTGCGTTGCATCAGTGTTGCTAGGTGCTACAAGGAGGACAATGTTCCCGACCTAATTGAGGAGGGTTTGTTTTTGGGTTCGGTTGGCGCTGCAAATAACAAGAATGGCCTGAAAAACTTGAACGTTACTCATATTTTAACCGTGGCATCTTCGTTGTCACCCTTGTATCCCAATGATTTTACATATAAAGTTATTGCAGTAACGGATAGAGAAGAGACAAACATAAAACAGTATTTTGAGGAGTGTTGTGATTTTATTGATGAAGCTAAAAGGCTTGGTGGTGGAGTGTTGGTTCATTGCTTTGTTGGAAAATCCAGAAGTGTGACTATAGTAATTGCATACCTCATGAAGAGGCGTGGAATGAGCTTATCTCAGGCTCTGGGACATGTAAAGAGTAGACGACCACTTGCATCTCCCAATGCTGGTTTCATGTCTCAGCTGCAGGAGTTGGAAAACTCCCTTCAAGATTATTTTTCGGCCAACCGATCTTCTGCCTCAAATCAAGAAAATAAAGGCCTCGATATAAGTCGATTGCGAACCTTTGACTAG 588 0.4184 MDDESMKKQIAALLRCISVARCYKEDNVPDLIEEGLFLGSVGAANNKNGLKNLNVTHILTVASSLSPLYPNDFTYKVIAVTDREETNIKQYFEECCDFIDEAKRLGGGVLVHCFVGKSRSVTIVIAYLMKRRGMSLSQALGHVKSRRPLASPNAGFMSQLQELENSLQDYFSANRSSASNQENKGLDISRLRTFD* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g01088 195 MobiDBLite consensus disorder prediction 174 195 - -
Pte10g01088 195 Gene3D Protein tyrosine phosphatase superfamily 30 189 IPR029021 -
Pte10g01088 195 PRINTS Atypical dual specificity phosphatase family signature 33 45 - -
Pte10g01088 195 PRINTS Atypical dual specificity phosphatase family signature 91 102 - -
Pte10g01088 195 PRINTS Atypical dual specificity phosphatase family signature 50 61 - -
Pte10g01088 195 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 28 168 IPR029021 -
Pte10g01088 195 SMART dsp_5 28 166 IPR020422 GO:0006470|GO:0008138
Pte10g01088 195 Pfam Dual specificity phosphatase, catalytic domain 36 165 IPR000340 GO:0008138|GO:0016311
Pte10g01088 195 FunFam Dual specificity phosphatase 12 30 183 - -
Pte10g01088 195 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 89 148 IPR000387 GO:0016311|GO:0016791
Pte10g01088 195 CDD DSP 29 162 - -
Pte10g01088 195 ProSiteProfiles Dual specificity protein phosphatase domain profile. 28 169 IPR020422 GO:0006470|GO:0008138
Pte10g01088 195 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE 26 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g01088 Pte-Chr10 28167281 28170335 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g01088 32 168 Protein tyrosine phosphatase (PTP) family AT3G06110 62.044 5.47e-61 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g01088 - - cill:122274628 263.077