Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g01075 ATGGAGGATTCCACTCAATCGTTTCATTCTTCTTCTTCAAGCTTATGTGGGATTGCTTCTCTGTCAGCTTCATCGTCTTCTTCTGCATCTTTTGATGACAGTATCGATGACTCCTGCAGCATTTGCCTTGAACCCTTCAGCATTGATGATCCCGCCAGTATTACCAATTGCAAGCATGAATACCATCTGCACTGCATTCTTGACTGGTCCCAGAGAAGCTTAGAGTGCCCAATATGTTGTCGATTGCTTGTCTTAAGTGATCCATCAAGCCAAGAGCTTTTAGCTCCAGTGGAGGCTACAAGGCATTCAAGGACAAGGAACGTAGCTTCTTCCATGTTCACTAATGACAGCCCTGAACATGATAGTTCGGATTCAGATGATCCAGATATACATGAAGAAATTATGCAGCACCTTATAGTGGTGAATGGAGATCAATATGTTTGTGGAGGAGAAGGGCAAAGATCTGGAACGATTTCTCCACATATTCTTGTTTTAAACTCATCAGCTTATGCATCTGGCATCCAACCTCTAAACTCACCACTCCAATTAGGAAACAACTATCCAGTTCCTATGGCACCTTCTGGGGTTAATATTGAACCTTCCCCATCTGCCACTGGATTGGTGAGAAGTACAACTTCTGGTGGGATAGATGTCCCTTTTGATCAAAGCCAGCCTCCAGCTGAGACTCCTGGTAGACTAAATACTTCTGAGGTGTTCGCATTCCCAGAGACCATTAAATCTAAATTCACTGCTGCTTCGGCTAGATACAAGGAATCAATCTCAAAAAGCACTCGAGGCCTGAGAGAGAAGTTACTTGCTCATAATAGCTCTGTCAAAGAGTTGAGTAAAGGAGTTCAGCGGGAGATGAATGCAAGCATAGCTGGATTGGCAAGAATGATTGAACGCCTTGAACTTTCATCAAAGAGGACATCACCTTCTTCTCCTGCCGCCAGCTTAAACGGTGGATCTTCAAGTACCCTCTTTAAAGGAAAGAACTTACAAGAAAATGTCAATGATCAGCCCCATAGTGAAGATAGCATGGTTTTTGTTCCTGATTTAAGTTCGGCTGCAACCTCACATTGCTCTAGCATGGTTTCTTGTCCCATGGAAGTACGTCCAGCACATTTGGATGGCGGACATTGA 1143 0.4374 MEDSTQSFHSSSSSLCGIASLSASSSSSASFDDSIDDSCSICLEPFSIDDPASITNCKHEYHLHCILDWSQRSLECPICCRLLVLSDPSSQELLAPVEATRHSRTRNVASSMFTNDSPEHDSSDSDDPDIHEEIMQHLIVVNGDQYVCGGEGQRSGTISPHILVLNSSAYASGIQPLNSPLQLGNNYPVPMAPSGVNIEPSPSATGLVRSTTSGGIDVPFDQSQPPAETPGRLNTSEVFAFPETIKSKFTAASARYKESISKSTRGLREKLLAHNSSVKELSKGVQREMNASIAGLARMIERLELSSKRTSPSSPAASLNGGSSSTLFKGKNLQENVNDQPHSEDSMVFVPDLSSAATSHCSSMVSCPMEVRPAHLDGGH* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g01075 380 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 84 IPR013083 -
Pte10g01075 380 MobiDBLite consensus disorder prediction 306 329 - -
Pte10g01075 380 MobiDBLite consensus disorder prediction 105 129 - -
Pte10g01075 380 Pfam Ring finger domain 37 79 IPR001841 -
Pte10g01075 380 ProSiteProfiles Zinc finger RING-type profile. 39 79 IPR001841 -
Pte10g01075 380 SMART ring_2 39 79 IPR001841 -
Pte10g01075 380 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 24 87 - -
Pte10g01075 380 SUPERFAMILY RING/U-box 36 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g01075 Pte-Chr10 27701774 27705836 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g01075 31 87 C3H Transcription Factor Family AT4G23450 47.368 5.99e-13 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g01075 K19043 - qsa:O6P43_021605 360.918