Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g01073 ATGCACACTCTAGCTTTATCAACTGTACAGCGTCTCTCTCTTTCAGGGGTCGTTTCTTATCAAAAACCATGTCGTGCTACTACTGCTTCTACCTTTTCCTTTCATTTACAGAACCGTAGCTGGATACCCATATCCTCTTTCCGCTTCTCCATTTCAAAGTTCAAACCTTTACAAGTAATTCCATCTTCTTCCCTAGCCGCCGAAGCTACTCAAGAAAACACGCCCACTCCGACTCTCAGAGAATTATGCCATGGTCATGTTCCCGACCATATACTGCGAAGGATGGAAGAGCTTGGATATGTTCTTCCCACAGATGTGCAAAGGCAAGCACTGCCTGTTCTATTTTCAGGGCATGACTGCATACTTCATGCTCAGACGGGTTCTGGGAAGACACTGGCATATCTTCTCTTGATACATGCAGTTGTGAGTGCTAAAAGATCTTCAGTTCAAGCTCTCATTGTCGTGCCCACCCGTGAACTTGGTATTCAAGTCACAAAAGTTGCTAGGGTGTTGGCAGCTAAACCAGAGGAATCAGTATCTGAGCAGAAGCCATGCACTGTCATGGCTCTTCTAGATGGTGGAATGTTGAAACGACATAAAAGTTGGCTGAAGGCGGAGCCTCCTACTATAGTGGTTGCTACAGTTGCGAGTTTATGCCGAATGGTTGACAAGAAAATATTTCCGCTTAATTCTGTGCGGGTGCTGGTGATTGATGAGGTTGATTTCATTTTCAATTCTTCAAAGCTAGTCAGTTATCTTAAAAAGCTTTTGCAATCATACTCTTCATGTGATAGCCGTCAGACTATTTTTGCAAGTGCCTCTATACCTCAGCATAGACGATTTGTTCATGACTGTATACAGCAGAAATGGACTAAGAACGATGTTATTCATGTTCATGTGAGTCCAATGGAAGCCATGCCAATACGACTGCATCATAGATTTGTGGTATCATGTAAAAGCAAGAAACATGAGACTTTGTTATCCTTAATACACTCTGATGTCCCAGAGTCTGGAATAATATTCGTTGGCGAACAGTCTGAGAAATCGAAGAAGGCTGGGGATGATCCTGCAACAACTTTTCTATTTGATTTCTTAAAGACCTCATATAAGGGTTCTTTAGAAATCATTATCATGGAAGAGGAAATGAATTTTAATTCACGAGCTGCGTCACTGCTAGAAGTGAGACAAGGAAGCAGCTTTCTTCTTGTTGCAACAGATATAGCTGCCAGAGGTGTTGACCTGCCACAAACATCTCATATATACAACTTCGATCTACCAAAGACTGCAGTAGATTATATTCATCGTGCGGGAAGGACTTGCAGAAGGCCATTTTCTGACGAGAGATGCTTAGTTACTAATATTGTAGTGCCTGAGGAAAGGTTTGTTTTGGAGAGGTATGAAAATGAGTTGAAGTTTATCTGTGAAGAACTTAGTTTGTAA 1440 0.4188 MHTLALSTVQRLSLSGVVSYQKPCRATTASTFSFHLQNRSWIPISSFRFSISKFKPLQVIPSSSLAAEATQENTPTPTLRELCHGHVPDHILRRMEELGYVLPTDVQRQALPVLFSGHDCILHAQTGSGKTLAYLLLIHAVVSAKRSSVQALIVVPTRELGIQVTKVARVLAAKPEESVSEQKPCTVMALLDGGMLKRHKSWLKAEPPTIVVATVASLCRMVDKKIFPLNSVRVLVIDEVDFIFNSSKLVSYLKKLLQSYSSCDSRQTIFASASIPQHRRFVHDCIQQKWTKNDVIHVHVSPMEAMPIRLHHRFVVSCKSKKHETLLSLIHSDVPESGIIFVGEQSEKSKKAGDDPATTFLFDFLKTSYKGSLEIIIMEEEMNFNSRAASLLEVRQGSSFLLVATDIAARGVDLPQTSHIYNFDLPKTAVDYIHRAGRTCRRPFSDERCLVTNIVVPEERFVLERYENELKFICEELSL* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g01073 479 Gene3D - 55 296 IPR027417 -
Pte10g01073 479 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 111 293 IPR014001 -
Pte10g01073 479 Pfam DEAD/DEAH box helicase 104 277 IPR011545 GO:0003676|GO:0005524
Pte10g01073 479 Gene3D - 308 476 IPR027417 -
Pte10g01073 479 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 322 479 IPR001650 -
Pte10g01073 479 Pfam Helicase conserved C-terminal domain 322 441 IPR001650 -
Pte10g01073 479 SMART helicmild6 359 443 IPR001650 -
Pte10g01073 479 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 112 451 IPR027417 -
Pte10g01073 479 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 72 471 - -
Pte10g01073 479 CDD DEADc 91 299 - -
Pte10g01073 479 CDD SF2_C_DEAD 310 441 - -
Pte10g01073 479 SMART ultradead3 99 313 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g01073 Pte-Chr10 27669481 27681628 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g01073 60 441 Eukaryotic Initiation Factors Gene Family AT3G19760 24.093 3.08e-23 99.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g01073 - - pvy:116135024 630.557