Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g01060 ATGACGGGTTCTGGGAAGACACTGGCATATCTTCTCTTGATACATGCAGTTGTGAGTGCTAAAAGATCTTCAGTTCAAGCTCTCATTGTCGTGCCCACCCGTGAACTTGGTATTCAAGTCACAAAAGTTGCTAGGGTGTTGGCAGCTAAACCAGAGGAATCAGTATCTGAGCAGAAGCCATGCACTGTCATGGCTCTTCTAGATGGTGGAATGTTGAAACGACATAAAAGTTGGCTGAAGGCGGAGCCTCCTACTATAGTGGTTGCTACAGTTGCGAGTTTATGCCGAATGGTTGACAAGAAAATATTTCCGCTTAATTCTGTGCGGGTGCTGGTGATTGATGAGGTTGATTTCATTTTCAATTCTTCAAAGCTAGTCAGTTATCTTAAAAAGCTTTTGCAATCATACTCTTCATGTGATAGCCGTCAGACTATTTTTGCAAGTGCCTCTATACCTCAGCATAGACGATTTGTTCATGACTGTATACAGCAGAAATGGACTAAGAACGATGTTATTCATGTTCATGTGAGTCCAATGGAAGCCATGCCAATACGACTGCATCATAGATTTGTGGTATCATGTAAAAGCAAGAAACATGAGACTTTGTTATCCTTAATACACTCTGATGTCCCAGAGTCTGGAATAATATTCGTTGGCGAACAGGTATTTTATGATTGGCGATTTTCGGAGCTAGTCCTGTCATTTCTTTATAGAATCACGCAAACACATCCAAGTATTCTTTTAACAATTTAA 753 0.4064 MTGSGKTLAYLLLIHAVVSAKRSSVQALIVVPTRELGIQVTKVARVLAAKPEESVSEQKPCTVMALLDGGMLKRHKSWLKAEPPTIVVATVASLCRMVDKKIFPLNSVRVLVIDEVDFIFNSSKLVSYLKKLLQSYSSCDSRQTIFASASIPQHRRFVHDCIQQKWTKNDVIHVHVSPMEAMPIRLHHRFVVSCKSKKHETLLSLIHSDVPESGIIFVGEQVFYDWRFSELVLSFLYRITQTHPSILLTI* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g01060 250 Pfam DEAD/DEAH box helicase 2 153 IPR011545 GO:0003676|GO:0005524
Pte10g01060 250 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 156 IPR027417 -
Pte10g01060 250 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 2 221 - -
Pte10g01060 250 Gene3D - 1 170 IPR027417 -
Pte10g01060 250 SMART ultradead3 2 189 IPR014001 -
Pte10g01060 250 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 169 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g01060 Pte-Chr10 27570022 27575740 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g01060 2 163 Eukaryotic Initiation Factors Gene Family AT5G11200 25.595 1.14e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g01060 - - pvy:116135024 333.183