Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g01053 ATGCTGTCCGATCATTTACGAAATGGTATGGAGAAGGCGAAGCTCGTTTGGTCTCAGATACCGAATGTTGAGAACGTTGAGTATCGTGAAGACACTGTAGGTAACGATGTGGATAGCCTTGACTATGAAGTCTTCGAGAATTATGCTTATCGGCAAGATCAGGCTGAGAGAGGGAAGTTATACGTTGGGTATTTACTGGTGATGAAGTGGTTCTTTGCTCTGCTCATTGGCATGGGGACTGGGTTTGCTGCCGTTTTCATTAATATTTCTGTCGAGAACTTTGCTGGATGGAAGTTCTCATTAACTTTCAACATTATTCAAAAATCTTATTTGATTGGATTTATAGTTTATGTTTTGATCAACTTGATCTTAGTGTTTTCATCTGTATATATTATCACCCAATTTGCTCCAGCAGCTGCTGGCTCTGGTATACCTGAGATTAAGGGTTACTTGAATGGAATTGATATCCACGGTGTCCTCCTGTTCAGGACCTTGATTGGCAAGATATTTGGGAGCATTGGTTCAGTGGGAGGTGGCCTTGCCTTAGGCAAAGAAGGTCCTCTTGTTCATACTGGTGCTTGTATAGCTTCTTTACTTGGGCAGGGAGGTTCCACAAGATATCATCTCAAGTCCAGGTGGTTCCAAGTATTTAAAAGCGATAGGGATCGCCGTGATCTGGTGACCTGTGGCTGTGCTGCTGGAGTTGCTGCTGCCTTCAGAGCCCCTGTTGGTGGTGTGTTGTTTGCATTGGAAGAGGTGACATCTTGGTGGAGGAGTCAACTTATGTGGCGTGTTTTCTTTACTTCTGCTGTGGTGGCAGTTGTAGTGCGAACTGCAATGGGATGGTGTAAAAGTGGGAAGTGTGGGAATTTCGGCTCTGGTGGCTTCATAATATGGGACTTATCAGATGGTCAAGAAGATTATTCAATTCAGGAGTTCTTTCCTATGACCATAATTGGTGTTACTGGCGGTCTACTTGGAGCTCTGTTCAATCAGCTCACCCTGTACATGACTGCCTGGCGTCGAAATTATCTGCACAAGAAAGGAAACCGGGTGAAGATTATGGAGGCATGTCTTATTTCCGTGATAACTTCAGTTATTTCTTTTGGATTACCACTTCTAAGGAGATGCAGCCAATGCCCTGAAGGAGATCCTGATGCAGGTATTGAGTGCCCAAGACCTCCAGGAGTATACGGAAATTATGTAAATTTCTATTGTGGAAAGGAGAAAGAATACAATGATCTTGCAACTATTTTCTTTAATACGCAGGATGACGCGATCAGAAATTTATTCAGTGCAAAAACCATACATGAGTTTAATGCTCGAAGTTTATTGACATTTTTGGCTATGTTTTATACATTAGCAGTGGTGACATATGGTACTGCTGTGCCAGCGGGGCAATTTGTTCCTGGAATAATGATAGGCTCAACATATGGACGTCTTGTCGGGCTGTTTGTTGTAAGACATTACAAGAGGCTTAAAATTGAAGAAGGAACATACGCATTGCTTGGAGCTGCATCTTTTCTTGGTGGTTCAATGCGGATGACGGTGTCTTTATGTGTCATCATGGTTGAAATCACTAATAACTTAAAACTTCTGCCTCTTATCATGCTTGTTCTTCTTATTTCGAAGGCTGTTGGAGACACTTTTAATGAGGGTATTTATGAAGAGCAGGCTCGATTAAGAGGTATTCCGCTGCTGGAATCAAGGTCCAAGTACCAGATGAGGAATATGACAGCAAAAGAGGCCTCTGGAAATGAAAGGGTTGTATCCTTTCCACGTGTTGTCAAGGTTGCTAATGTAGTTTCCATTTTAGGAAGCAACAAACATAATGGTTTCCCTGTGATTGACCATACGAGAGATGGAGAACCCGTTGTAATTGGATTAGTGCTTCGGAGTCATTTACTAGTACTCCTGCAGACTAAGGTTGATTTCCAGCATAGTCCCTTGCCCCATAATCCAAGCGAGGGATCAAGCCCTACATTGCACAAATTTGGTGAATTTTCAAAACCTGTATCAACTAAAGGATTATCCCTGGATGATATACATTTGAGTCAAGATGACCTAGAAATGTACTTGGAACTTGCTCCATTCTTGAATCCTTCCCCCTACATTGTTCCAGAAGATATGTCTTTGGCCAAGGTCTACAATCTCTTCCGTCAACTTGGGTTGAGGCATTTATTAGTTGTTCCTCGTCCCTCTAATGTGGTTGGTTTGATAACGAGAAAGGATTTGTTGATTGAGGATAATGAAGAGTCTGCTAACTTAGAGCTCGAATCAACTAGCGACCAGCGTCTTGATGAATCGAGAAATGTGAATGCAGAGCAGCCGTCGGTAAATAGTCTTGTGTTCTAA 2355 0.4242 MLSDHLRNGMEKAKLVWSQIPNVENVEYREDTVGNDVDSLDYEVFENYAYRQDQAERGKLYVGYLLVMKWFFALLIGMGTGFAAVFINISVENFAGWKFSLTFNIIQKSYLIGFIVYVLINLILVFSSVYIITQFAPAAAGSGIPEIKGYLNGIDIHGVLLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTRYHLKSRWFQVFKSDRDRRDLVTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAVVAVVVRTAMGWCKSGKCGNFGSGGFIIWDLSDGQEDYSIQEFFPMTIIGVTGGLLGALFNQLTLYMTAWRRNYLHKKGNRVKIMEACLISVITSVISFGLPLLRRCSQCPEGDPDAGIECPRPPGVYGNYVNFYCGKEKEYNDLATIFFNTQDDAIRNLFSAKTIHEFNARSLLTFLAMFYTLAVVTYGTAVPAGQFVPGIMIGSTYGRLVGLFVVRHYKRLKIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKLLPLIMLVLLISKAVGDTFNEGIYEEQARLRGIPLLESRSKYQMRNMTAKEASGNERVVSFPRVVKVANVVSILGSNKHNGFPVIDHTRDGEPVVIGLVLRSHLLVLLQTKVDFQHSPLPHNPSEGSSPTLHKFGEFSKPVSTKGLSLDDIHLSQDDLEMYLELAPFLNPSPYIVPEDMSLAKVYNLFRQLGLRHLLVVPRPSNVVGLITRKDLLIEDNEESANLELESTSDQRLDESRNVNAEQPSVNSLVF* 785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g01053 784 SMART cbs_1 702 750 IPR000644 -
Pte10g01053 784 SMART cbs_1 588 640 IPR000644 -
Pte10g01053 784 CDD CBS_pair_voltage-gated_CLC_euk_bac 589 746 - -
Pte10g01053 784 CDD ClC_6_like 39 567 - -
Pte10g01053 784 MobiDBLite consensus disorder prediction 756 784 - -
Pte10g01053 784 Pfam Voltage gated chloride channel 125 547 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pte10g01053 784 FunFam Chloride channel ClC3 61 379 - -
Pte10g01053 784 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 22 752 - -
Pte10g01053 784 FunFam Chloride channel protein 691 779 - -
Pte10g01053 784 Gene3D - 576 754 IPR046342 -
Pte10g01053 784 ProSiteProfiles CBS domain profile. 699 758 IPR000644 -
Pte10g01053 784 PRINTS Plant CLC chloride channel signature 415 431 IPR002251 GO:0005247|GO:0006821|GO:0016020
Pte10g01053 784 PRINTS Plant CLC chloride channel signature 43 51 IPR002251 GO:0005247|GO:0006821|GO:0016020
Pte10g01053 784 PRINTS Plant CLC chloride channel signature 253 261 IPR002251 GO:0005247|GO:0006821|GO:0016020
Pte10g01053 784 PRINTS Plant CLC chloride channel signature 267 277 IPR002251 GO:0005247|GO:0006821|GO:0016020
Pte10g01053 784 PRINTS Plant CLC chloride channel signature 285 292 IPR002251 GO:0005247|GO:0006821|GO:0016020
Pte10g01053 784 SUPERFAMILY CBS-domain pair 573 746 IPR046342 -
Pte10g01053 784 PRINTS Chloride channel signature 463 483 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pte10g01053 784 PRINTS Chloride channel signature 554 568 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pte10g01053 784 PRINTS Chloride channel signature 498 514 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pte10g01053 784 PRINTS Chloride channel signature 516 535 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pte10g01053 784 PRINTS Chloride channel signature 137 154 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pte10g01053 784 PRINTS Chloride channel signature 232 251 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pte10g01053 784 PRINTS Chloride channel signature 168 187 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pte10g01053 784 Pfam CBS domain 700 746 IPR000644 -
Pte10g01053 784 Gene3D Clc chloride channel 62 568 - -
Pte10g01053 784 SUPERFAMILY Clc chloride channel 47 569 IPR014743 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g01053 Pte-Chr10 27457295 27466263 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g01053 1 764 Ion Channels AT5G26240 80.026 0.0 1207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g01053 K05016 - gmx:100811908 1259.97