Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g00994 ATGGCATTATTGGAACTGATACCTATAGGGACAATACTGGGTGTGCTGACAAACCAGGTCTTGAAGACAGCTACTGCAGCCAGCGACATTCTTATTGAGAAGGAAAGTTTTAAGGTTCTTTCAAAGCACCTTTTTGACATCGAGCCGGTCTTGAAGGAGTTGCAGCTCCAAGAACTGAATGACTCTCAAGCTGCAAGACTGGCTCTTGAGTCACTTGAAGCAGATGTCAGAAAAGCTAATAACTTAGTAGAAAAATACAAGCACCGATCTAGATTCTATTTACTGTTAAGGTGCCGATTTATTGTTAATGAGGTTGAAGAAGTTACAAGGGATATTGGTAGATCTCTTGCTTCGTTGTCCCTTGCAAATACTGAAGTCTTAACAAGGATATCTGATCAGGTGAATAGGCTAATGAATGAGATGCAAAGGGTAGAACTTGAAGCTTCACGTTCTCAGCTTCAAATTGTTGATAAGTTGAGCCAAGGTATCAGATACCAGAAATTAGATCAGACTTTTGCAAATATCATGTTGGAGGAAATAGCAAGTGCAGTAGGGGTGCCTGTTGAGCCATCAGCAATTTGTGAGGAGCTCGCTAGCTTCAAAAAGGAGAAAGAAGAAGCTGCCTACCGAAAAGAAAGAGCTGAAGTTCTCTTTTTGGAGCAGGTTATTGAGCTACTCTCGCAAGCTGATGCTGCAAGAGATTATGAAGAAGTCAAGAAGCACTATATGGAAAGGAGTCATGCCATAGAGCCGTACAATTCTAAACATGTATTAATCCCGCCGCTTAATACTTTTATTTGCTGCCTGAATAGAACAGTGATGGTTGATCCTGTCAACCTTTGCACTGGTACTACATGTGAGAGAGCTGCTATTGAAGCTTGGTTTGACAGTGGCAAGAGAACAGACCCGAAAACAGAAGAGGCTCTAGAAGATACTACCTTGAGGTCCAATCTTCCTCTAAGGCAATCCATACAGGAGTGGAGAGAGCTGAATTACTGCATAATGATTAGATCTTGCAAGGAGAATTTGCTATCAGGCGATGATTCATCTGTAGAACAAGCTCTGACTGAAATGGAGGAACTTGTCAGAGAAAATTCTGTTAATAAAGATTGGATTTCTATTGGAGGGCTAACTGATATTTTAATATCAATTCTCGGGAGCTCCTCAAACAAAGATTATAAGAGAAAAATTCTGATAACGTTGAAGAATCTTGTAGAGGGGCACAGAAGAAACAAGGAAAAAGTGATCGAGTCAGAGGGTTGGGATCAAATTATTCGGTGCTTAAGGAGTACAAGCATTTCTAGGCCAGCTATTGATTTACTATTTGAGCTACTGCAAGATAGATCTAGTTGGAATGAGTCCATTTGCAGAAAACTCTCGCAGAAAAGGAGTGCAATTCTTTTCCTTGTTACTCTTCTAAATGGTCCAGTCAAGGAGTCAGCTGAGATTGCAGAGAAGATTTTGGTGGAGCTTTTTGCTGTGAATGAGGAAAGCATTTCATTTGCAGCTAAGTCTGGATATTATAAGCCACTTATTGCACGAATAGTGCAAGGGCCAGAAGCTTCAAGAATGTCAATGGTGAAAGCTATTGTTGACATGGAGTGGGTTGATTTGAATTTGAAACTTCTTGGTGAGGAAGGGGTTATACCTCCTTTACTCGAAATGCTATCTCATCACAAAATTGAAACAAAAGAATTATCATTGTCTGCGCTGGTTAAGTTAGCTGGTTCCCGTGCCAATAAAGAGATAATTGCTTCGGCTGGTGGGGTTCCCATTGTTCTAAACTTTCTCTTCTCTACCCACGTGCGCACAGTTGTTATCATCAAATGCTATGAAATATTAGAGAAGCTTTCTTATAATGATGGAGTCAGATTCTTTATTGATGAAGAGGGGAAGCAGCTTGAATTGGAGCCAATCATTTCCCATTTATTGACTGTACTAAAGAATCCAAACTCAGCTCTCAGTATCCGCAGGCCTGCATTGCGCTCACTGCTTGGGATTTGCAAGTTTGATGAAGCAGGGTTGGTGGAGAAGGCAGTGCTGGCTGCCAATGGTGTTGCTCCTGTCCTTTCTCTTTTAGATGACTCTGATTCAGAAGTCAGGGAGGCTGCTATAAGCCTGTTATTCCTCTTCTCTCAACATGAACCAGAGGGAATCGTTGAATACCTTCTGAAGCCTAGAAGACTGGAGGCTTTAGTTAGTTTCCTTGAGAACAAGAATGACAATGAGGTACAAATGGCAGCAGCTGGCTTGTTAGCCAACCTACCAAAATCAGAAAGAGAACTGACCAAAAAGTTAATTGAGCTAAATGGACTTGATGCAATCTTGAATATCTTAAATTCTGGGACCATGGAAGCAAAAGAAAATGCTCTCAGTGCTCTATTCAGGTTTGCGGATCCTACAGATATTGAGTCTCAACATGTTTTGGTTGAGAAAGGAGCATACCGTTTGCTTGTAGATTTTCTTAGGATGGATTCAATAACAGCAAAGGCAAGAGCAGCAGCACTTATTGGTAACCTTTCCATGAGCACCCCAAAGCTCTCAGCTGCGCCTCAACCGGCTGGTTGCTGGTGTTTCCGCTCGCCAAAAATCCATTTATGTCCCATACATGGCGGAATTTGCAGCGTGACAACCACTTTTTGTCTCTTAGAAGGAAATGCTTTGCTTTCCTTGGTAAGATTGTTACATGGGGAGGTCCATGCAACTGCTTACGAAGCAATTCAAGCTCTGTCCACATTGTTTTCGGAAGGCTCCATTCAAATGGGAGCTAATATACTGCATGAGGCTGATGCAATCAAACCCATCTTGGATGTCTTGACTTGGGGAACAGATCCACTGAAGGAAGAAGCTCTCAGACTGCTGGAGAAGGTCTTTGTTTCAAAGGAAATGGTGGATCATTATGGTAAGAGAGCTAGATTGTATCTTGTTTGCATGGCTGGCAGGAACATTCATGAGGATGGCCAAGTTAGGATGAAAGCCGCTAGGGTTTTGCAATTGCTTGAGCGTTACTCAAAGTCATCTACATCTCTCTTTTCTGGAGTTTTGGGTTAA 3051 0.4189 MALLELIPIGTILGVLTNQVLKTATAASDILIEKESFKVLSKHLFDIEPVLKELQLQELNDSQAARLALESLEADVRKANNLVEKYKHRSRFYLLLRCRFIVNEVEEVTRDIGRSLASLSLANTEVLTRISDQVNRLMNEMQRVELEASRSQLQIVDKLSQGIRYQKLDQTFANIMLEEIASAVGVPVEPSAICEELASFKKEKEEAAYRKERAEVLFLEQVIELLSQADAARDYEEVKKHYMERSHAIEPYNSKHVLIPPLNTFICCLNRTVMVDPVNLCTGTTCERAAIEAWFDSGKRTDPKTEEALEDTTLRSNLPLRQSIQEWRELNYCIMIRSCKENLLSGDDSSVEQALTEMEELVRENSVNKDWISIGGLTDILISILGSSSNKDYKRKILITLKNLVEGHRRNKEKVIESEGWDQIIRCLRSTSISRPAIDLLFELLQDRSSWNESICRKLSQKRSAILFLVTLLNGPVKESAEIAEKILVELFAVNEESISFAAKSGYYKPLIARIVQGPEASRMSMVKAIVDMEWVDLNLKLLGEEGVIPPLLEMLSHHKIETKELSLSALVKLAGSRANKEIIASAGGVPIVLNFLFSTHVRTVVIIKCYEILEKLSYNDGVRFFIDEEGKQLELEPIISHLLTVLKNPNSALSIRRPALRSLLGICKFDEAGLVEKAVLAANGVAPVLSLLDDSDSEVREAAISLLFLFSQHEPEGIVEYLLKPRRLEALVSFLENKNDNEVQMAAAGLLANLPKSERELTKKLIELNGLDAILNILNSGTMEAKENALSALFRFADPTDIESQHVLVEKGAYRLLVDFLRMDSITAKARAAALIGNLSMSTPKLSAAPQPAGCWCFRSPKIHLCPIHGGICSVTTTFCLLEGNALLSLVRLLHGEVHATAYEAIQALSTLFSEGSIQMGANILHEADAIKPILDVLTWGTDPLKEEALRLLEKVFVSKEMVDHYGKRARLYLVCMAGRNIHEDGQVRMKAARVLQLLERYSKSSTSLFSGVLG* 1017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g00994 1016 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 11 1008 - -
Pte10g00994 1016 Gene3D - 537 721 IPR011989 -
Pte10g00994 1016 SMART arm_5 577 619 IPR000225 GO:0005515
Pte10g00994 1016 SMART arm_5 536 576 IPR000225 GO:0005515
Pte10g00994 1016 SMART arm_5 628 669 IPR000225 GO:0005515
Pte10g00994 1016 SMART arm_5 759 799 IPR000225 GO:0005515
Pte10g00994 1016 SMART arm_5 673 713 IPR000225 GO:0005515
Pte10g00994 1016 SMART arm_5 715 757 IPR000225 GO:0005515
Pte10g00994 1016 SMART arm_5 408 446 IPR000225 GO:0005515
Pte10g00994 1016 SMART arm_5 802 842 IPR000225 GO:0005515
Pte10g00994 1016 ProSiteProfiles U-box domain profile. 260 334 IPR003613 GO:0004842|GO:0016567
Pte10g00994 1016 SUPERFAMILY ARM repeat 539 958 IPR016024 -
Pte10g00994 1016 Pfam U-box domain 264 329 IPR003613 GO:0004842|GO:0016567
Pte10g00994 1016 Coils Coil 127 154 - -
Pte10g00994 1016 Gene3D - 335 536 IPR011989 -
Pte10g00994 1016 Coils Coil 62 89 - -
Pte10g00994 1016 SUPERFAMILY RING/U-box 251 330 - -
Pte10g00994 1016 CDD RING-Ubox_PUB 265 314 IPR045210 -
Pte10g00994 1016 Gene3D - 722 1007 IPR011989 -
Pte10g00994 1016 SMART Ubox_2 264 327 IPR003613 GO:0004842|GO:0016567
Pte10g00994 1016 CDD MLKL_NTD 34 142 - -
Pte10g00994 1016 SUPERFAMILY ARM repeat 199 618 IPR016024 -
Pte10g00994 1016 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 547 589 IPR000225 GO:0005515
Pte10g00994 1016 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 727 755 IPR000225 GO:0005515
Pte10g00994 1016 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 262 334 IPR013083 -
Pte10g00994 1016 Gene3D - 7 123 IPR036537 GO:0007166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g00994 Pte-Chr10 26301325 26306784 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g00994 265 1015 U-box Gene Family AT1G76390 27.444 8.60e-47 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g00994 - - cave:132178877 1421.76