Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g00979 ATGATGGGAAAGAAGCATGATCTAAACTTGAAGGAAACTGAGCTTTGTTTGGGATTGCCTGGTGCTGGTGGCAATGGGGTTCATGAGCCAGAGACTCCCAAGAATACTGGCAAGAGAGGATTCTCAGAGACTATCGATCTCAAGCTTAATCTTCAGTCCAAGGAGGATATGAGTCAGAATTTGATGAATGCTACAAAGGAGATGAATCTTGTTTCTGGTGCTAAAGACCCAGCTAAGCCACCTGCTAAGGCACAAGTTGTGGGTTGGCCTCCAGTCCGATCGTACAGGAAGAACATAATGACACAGAAGAACAACACTGAGGAAGGTGACAAGGGTAGCAGCAGCAGCAGCGTCGCTGCATTTGTTAAAGTTTGCATGGATGGTGCACCATACCTTCGCAAGGTGGACTTGAAAATGTACAAGAGTTACCAAGAGCTGTCTGATGCTTTGGCTAAGATGTTCAGCTCTTTCACCATGGGTAACTATGGGCCCCAAGGAATGATAGACTTCATGAATGAGAGCAAGTTGATGGATCTTCTGAATAGTTCTGAGTATGTGCCAACCTATGAAGATAAGGATGGTGATTGGATGCTAGTGGGTGATGTCCCATGGGAGATGTTCGTCGAGTCATGCAAGCGCCTTCGAATAATGAAAGGCTCAGAAGCAATTGGACTGGCTCCAAGAGCAGTGGAGAAATGCAAAAACAGAAGCTGA 714 0.4594 MMGKKHDLNLKETELCLGLPGAGGNGVHEPETPKNTGKRGFSETIDLKLNLQSKEDMSQNLMNATKEMNLVSGAKDPAKPPAKAQVVGWPPVRSYRKNIMTQKNNTEEGDKGSSSSSVAAFVKVCMDGAPYLRKVDLKMYKSYQELSDALAKMFSSFTMGNYGPQGMIDFMNESKLMDLLNSSEYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAIGLAPRAVEKCKNRS* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g00979 237 FunFam Auxin-responsive protein 114 229 - -
Pte10g00979 237 Gene3D - 113 231 - -
Pte10g00979 237 SUPERFAMILY CAD & PB1 domains 114 218 - -
Pte10g00979 237 Pfam AUX/IAA family 34 228 IPR033389 -
Pte10g00979 237 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 7 224 IPR003311 GO:0005634|GO:0006355
Pte10g00979 237 ProSiteProfiles PB1 domain profile. 119 219 IPR000270 GO:0005515
Pte10g00979 237 MobiDBLite consensus disorder prediction 20 41 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g00979 Pte-Chr10 25253587 25255814 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g00979 111 227 B3 DNA Binding Superfamily AT4G23980 32.479 1.89e-09 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Pte10g00979 AUX_IAA 1.3e-83 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g00979 K14484 - qsa:O6P43_021493 381.333