Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g00978 ATGGGTCAAGCTACTGACTTGCCTTGTGATGGAGATGGCATTTGCATGATCTGTAAGGTGAAGCCATCTGAGGAGGAAAACTTGACTTGCAATACATGCGCAACGCCTTGGCATGTAAACTGCCTCTCTGCTAAGCCTGAGAAGTTGGCTGATACGATCGAATGGGAGTGCCCTGACTGCTCTTCCATGTTCAATGAGGTTCCGCTAGTTCCAGCTGTAAAGGGTTTGATCAATGGTCCCGGTGAGACCTCCTCTTCCGATGGCTTGGTCGCTGCCATTCGGGCGATTGAGGCTGATTCCTCTCTGACGGAGCAAGAGAAAGCCAGGAGACGTCAAGAGCTCTTGAGTGGTAAGTCTGGATTGGATGGAGATGAATCCGGTGACGGTGAGAAAAATGGAAATGGCGAAGGCAACGACGGTTTGGACATCCTTAACAATAGTCTGATGTGCGTCTCCTGCATTCAGCTACCTGACAGACCAGTGACGACTCCATGTGGCCACAACTTTTGCCTAAGATGCTTTCAGAAGTGGATAAACCAATTCAAGGATTCTTGCATGAAATGCCGCAAAAAAATTCCACCTGCCATGGCCAAGAATCCTCGCATCAACTCTGCTCTTGTTTCTGCCATTCGTCTGGCAAAAATGTCAAAAAATGTTGTCAATGGAGGACCGCCAAGAGCCTACCATTTTATCCACCAGCAAGACAGACCTGATAAGGCTTTTACTACTGAGCGAGCGCAAAGAAGTGGAAAAGCCAATGCTGCAAGTGGTAAAATTTTTGTGACTGTGCCTCAAGATCATTTTGGGCCAATTCCAGCCATAAATGACCCTTTGAGAAACCAGGGCGTTATGGTAGGGGAATGTTGGGAGGATAGGCTGGAGTGCCGGCAATGGGGTGTCCACTTTCCTCATGTTGCGGGTATAGCTGGTCAGTCTGATTATGGCGCACAATCTGTGGTTCTCTCTGGAGGTTACATTGATGATGAGGATCATGGAGAGTGGTTCCTCTACACTGGAAGTGGAGGTAGGGATCTTAGTGGAAACAAGAGAACAAATAAAGACCAGTCCTTCGACCAAACCTTTGAGAAATATAACAAGGCTCTCCAAGTTAGTTGTCTCAAAGGATATCCTGTCCGGGTTGTCAGGTCTCATAAAGAGAAACGATCAGCGTATGCCCCGGAAAAAGGTTTACGATATGATGGAATTTACAGGATCGAAATGTGTTGGAGAAAAGTGGGTAATCAGGGTTTCAAGGTTTGCCGTTACTTGTTTGTTAGATGTGACAATGATCCTGCGCCATGGACAAGTGATGAGCATGGGGATCGACCTAGAAAGCTGCCGAATATTTCAGAACTGAAAAAGGCGACCGATTTATGTGAGAGGAAGGGCAGTGCATCTTGGGACTTTGATGAAGATTCGTGCTGGAAATGGAAAAGGCCTTCACCTCCTAGCAAGAAGCCAGTAGCAAATCAGGATCCTGAGACGTTAAAAATAGCAAGGCGAGCTATAAGAAGAACACAACAAACATCTGTTAGAGATAGATTGCTACGGGAATTTAGCTGCTCATTGTGTAAGAAGGTAATGGAGCTTCCCGTGACAACACCCTGTGCCCATAATTTCTGCAAGTCTTGTCTGGATGCTGCATTTGCTGGTCGTTCAGCTGTCAGGGACAGAAGTAGAGGTGGAAGATCACTGCGTGTGCAAAAGAACGTGATGAAATGTCCATTTTGCCCTATGGACATTTCTGAATTTCTTCAAAACATCCAGGTTAACCGAGAATTGCAAAATTTGATTGAATCACTGAAATCTAAGGCTGAAGAGAATGAAGAGGCTGAGTCGTCAATTGATGAGGGGGAAGATGCTGAAGCAAGTAATAAGAAGGATGAAGATGCTAGGTTAAATGGTTGTAGCCCTGAGAAACCTGAGGTCAAGCGCAGAAAAATTGCTGGCGGCGAACGAAGGGCAGATTCCCCTGAAGAAGCAATGAATGAGGGAAGCAATTCACCATCAAGTCCTCTACATGTGCGTTCGGATGGAGACATTGAATGA 2049 0.4627 MGQATDLPCDGDGICMICKVKPSEEENLTCNTCATPWHVNCLSAKPEKLADTIEWECPDCSSMFNEVPLVPAVKGLINGPGETSSSDGLVAAIRAIEADSSLTEQEKARRRQELLSGKSGLDGDESGDGEKNGNGEGNDGLDILNNSLMCVSCIQLPDRPVTTPCGHNFCLRCFQKWINQFKDSCMKCRKKIPPAMAKNPRINSALVSAIRLAKMSKNVVNGGPPRAYHFIHQQDRPDKAFTTERAQRSGKANAASGKIFVTVPQDHFGPIPAINDPLRNQGVMVGECWEDRLECRQWGVHFPHVAGIAGQSDYGAQSVVLSGGYIDDEDHGEWFLYTGSGGRDLSGNKRTNKDQSFDQTFEKYNKALQVSCLKGYPVRVVRSHKEKRSAYAPEKGLRYDGIYRIEMCWRKVGNQGFKVCRYLFVRCDNDPAPWTSDEHGDRPRKLPNISELKKATDLCERKGSASWDFDEDSCWKWKRPSPPSKKPVANQDPETLKIARRAIRRTQQTSVRDRLLREFSCSLCKKVMELPVTTPCAHNFCKSCLDAAFAGRSAVRDRSRGGRSLRVQKNVMKCPFCPMDISEFLQNIQVNRELQNLIESLKSKAEENEEAESSIDEGEDAEASNKKDEDARLNGCSPEKPEVKRRKIAGGERRADSPEEAMNEGSNSPSSPLHVRSDGDIE* 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g00978 682 ProSiteProfiles Zinc finger RING-type profile. 150 189 IPR001841 -
Pte10g00978 682 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 69 IPR013083 -
Pte10g00978 682 Pfam RING-type zinc-finger 521 574 IPR027370 -
Pte10g00978 682 SUPERFAMILY PUA domain-like 252 447 IPR015947 -
Pte10g00978 682 CDD RING-HC_ORTHRUS_rpt1 146 193 IPR047498 -
Pte10g00978 682 SMART ring_2 521 577 IPR001841 -
Pte10g00978 682 SMART ring_2 15 60 IPR001841 -
Pte10g00978 682 SMART ring_2 150 188 IPR001841 -
Pte10g00978 682 ProSiteProfiles YDG domain profile. 278 426 IPR003105 -
Pte10g00978 682 FunFam E3 ubiquitin-protein ligase ORTHRUS 2 249 444 - -
Pte10g00978 682 Gene3D - 249 447 IPR036987 -
Pte10g00978 682 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 98 217 IPR013083 -
Pte10g00978 682 SMART G9a_1 273 430 IPR003105 -
Pte10g00978 682 Pfam Zinc finger, C3HC4 type (RING finger) 147 192 - -
Pte10g00978 682 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 3 615 IPR045134 -
Pte10g00978 682 ProSitePatterns Zinc finger RING-type signature. 536 545 IPR017907 -
Pte10g00978 682 FunFam Predicted protein 105 215 - -
Pte10g00978 682 MobiDBLite consensus disorder prediction 603 682 - -
Pte10g00978 682 SMART PHD_3 14 61 IPR001965 -
Pte10g00978 682 Coils Coil 587 621 - -
Pte10g00978 682 ProSiteProfiles Zinc finger PHD-type profile. 12 63 IPR019787 -
Pte10g00978 682 MobiDBLite consensus disorder prediction 619 660 - -
Pte10g00978 682 MobiDBLite consensus disorder prediction 102 138 - -
Pte10g00978 682 ProSitePatterns Zinc finger PHD-type signature. 15 60 IPR019786 -
Pte10g00978 682 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 499 626 IPR013083 -
Pte10g00978 682 Pfam SAD/SRA domain 281 429 IPR003105 -
Pte10g00978 682 ProSiteProfiles Zinc finger RING-type profile. 521 577 IPR001841 -
Pte10g00978 682 SUPERFAMILY RING/U-box 142 214 - -
Pte10g00978 682 MobiDBLite consensus disorder prediction 102 132 - -
Pte10g00978 682 SUPERFAMILY FYVE/PHD zinc finger 6 66 IPR011011 -
Pte10g00978 682 SUPERFAMILY RING/U-box 514 602 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g00978 Pte-Chr10 24873692 24978214 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g00978 1 615 C2H2 Transcription Factor Family AT5G39550 61.935 0.0 752
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g00978 K10638 - qsa:O6P43_017375 905.975