Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g00977 ATGGGTCAAGCTACTGACTTGCCTTGTGATGGAGATGGCGTTTGCATGATCTGTAAGGTGAAGCCATCTGAGGAGGAAAACTTGACTTGCAATACATGCGCAACGCCGTGGCATGTAAACTGCCTCTCTGCTAAGCCTGAGAAGTTGGCTGATACGATCGAATGGGAGTGCCCTGACTGCTCTTCCATGTTCAATGAGGTTCCGCTAGTTCCAGCTGTAAAGGGTTTGATCAATGGTCCCGGTGAGACCTCCTCTTCCGATGGCTTGGTCGCTGCCATTCGGGCGATTGAGGCTGATTCCTCTCTGACGGAGCAAGAGAAAGCCAAGAGACGTCAAGAGCTCTTGAGTGGTAAGTCTGGATTGGATGGAGATGAATCCGGTGACGGTGAGAAAAATGGAAATGGCGAAGGCAACGACGGTTTGGACATCCTTAACAATAGTCTGATGTGCGTCTCCTGCATTCAGCTACCTGACAGACCAGTGACGACTCCATGTGGCCACAACTTTTGCCTAAGATGCTTTCAGAAGTGGATAAACCAATTCAAGGATTCTTGCATGAAATGCCGCAAAAAAATTCCACCTGCCATGGCAAAGAATCCTCGCATCAACTCTGCTCTTGTTTCTGCCATTCGTCTGGCAAAAATGTCAAAAAATGTTGTCAATGGAGGACCGCCAAGAGCCTACCATTTTATCCACCAGCAAGACAGACCTGATAAGGCTTTTACTACTGAGCGAGCGCAAAGAAGTGGAAAAGCCAATGCTGCAAGTGGTAAAATTTTTGTGACTGTGCCTCAAGATCATTTTGGGCCAATTCCAGCCATAAATGACCCTTTGAGAAACCAGGGCGTTATGGTAGGCGAATGTTGGGAGGATAGGCTGGAGTGCCGGCAATGGGGTGTCCACTTTCCTCATGTTGCGGGTATAGCTGGTCAGTCTGATTATGGCGCACAATCTGTGGTTCTCTCTGGAGGTTACATTGATGATGAGGATCATGGAGAGTGGTTCCTCTACACTGGAAGTGGAGGTAGGGATCTTAGTGGAAACAAGAGAACAAATAAAGACCAGTCCTTCGACCAAACCTTTGAGAAATATAACAAGGCTCTCCAAGTTAGTTGTCTCAAAGGATATCCTGTCCGGGTTGTCAGGTCTCATAAAGAGAAACGATCAGCGTATGCCCCGGAAAAAGGTTTACGATATGATGGAATTTACAGGATCGAAATGTGTTGGAGAAAAGTGGGTAATCAGGGTTTCAAGGTTTGCCGTTACTTGTTTGTTAGATGTGACAATGATCCTGCGCCATGGACAAGTGATGAGCATGGGGATCGACCTAGAAAGCTGCCGAATATTTCAGAACTGAAAAAGGCGACCGATTTATGTGAGAGGAAGGGCAGTGCATCTTGGGACTTTGATGTGAGTGAAGATTCGTGCTGGAAATGGAAAAGGCCTTCACCTCCTAGCAAGAAGCCAGTAGCAAATCAGGATCCTGAGACGTTAAAAATAGCAAGGCGAGCTATAAGAAGAACACAACAAACATCTGTCAGAGATAGATTGCTACGGGAATTTAGCTGCTCATTGTGTAAGAAGGTAATGGAGCTTCCCGTGACAACACCCTGTGCCCATAATTTCTGCAAGTCTTGTCTGGATGCTGCATTTGCTGGTCGTTCAGCTGTCAGGGACAGAAGTAGAGGTGGAAGATCACTGCGTGTGCAAAAGAACGTGATGAAATGTCCATTTTGCCCTATGGACATTTCTGAATTTCTTCAAAACATCCAGGTTAACCGAGAATTGCAAAATTTGATTGAATCACTGAAATCTAAGGCTGAAGAGAATGAAGAGGCTGAGTCGTCAATTGATGAGGGGGAAGATGCTGAAGCAAGTAATAAGAAGGATGAAGATGCTAGGTTAAATGGTTGTAGCCCTGAGAAACCTGAGGTCAAGCGCAGAAAAATTGCTGGCGGCGAACGAAGGGCAGATTCCCCTGAAGAAGCAATGAATGAGGGAAGCAATTCACCATCAAGTCCTCTACATGTGCGTTCGGATGGAGACATTGAATGA 2055 0.4633 MGQATDLPCDGDGVCMICKVKPSEEENLTCNTCATPWHVNCLSAKPEKLADTIEWECPDCSSMFNEVPLVPAVKGLINGPGETSSSDGLVAAIRAIEADSSLTEQEKAKRRQELLSGKSGLDGDESGDGEKNGNGEGNDGLDILNNSLMCVSCIQLPDRPVTTPCGHNFCLRCFQKWINQFKDSCMKCRKKIPPAMAKNPRINSALVSAIRLAKMSKNVVNGGPPRAYHFIHQQDRPDKAFTTERAQRSGKANAASGKIFVTVPQDHFGPIPAINDPLRNQGVMVGECWEDRLECRQWGVHFPHVAGIAGQSDYGAQSVVLSGGYIDDEDHGEWFLYTGSGGRDLSGNKRTNKDQSFDQTFEKYNKALQVSCLKGYPVRVVRSHKEKRSAYAPEKGLRYDGIYRIEMCWRKVGNQGFKVCRYLFVRCDNDPAPWTSDEHGDRPRKLPNISELKKATDLCERKGSASWDFDVSEDSCWKWKRPSPPSKKPVANQDPETLKIARRAIRRTQQTSVRDRLLREFSCSLCKKVMELPVTTPCAHNFCKSCLDAAFAGRSAVRDRSRGGRSLRVQKNVMKCPFCPMDISEFLQNIQVNRELQNLIESLKSKAEENEEAESSIDEGEDAEASNKKDEDARLNGCSPEKPEVKRRKIAGGERRADSPEEAMNEGSNSPSSPLHVRSDGDIE* 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g00977 684 ProSiteProfiles Zinc finger RING-type profile. 150 189 IPR001841 -
Pte10g00977 684 SUPERFAMILY PUA domain-like 252 447 IPR015947 -
Pte10g00977 684 CDD RING-HC_ORTHRUS_rpt1 146 193 IPR047498 -
Pte10g00977 684 ProSiteProfiles YDG domain profile. 278 426 IPR003105 -
Pte10g00977 684 SMART ring_2 523 579 IPR001841 -
Pte10g00977 684 SMART ring_2 15 60 IPR001841 -
Pte10g00977 684 SMART ring_2 150 188 IPR001841 -
Pte10g00977 684 MobiDBLite consensus disorder prediction 605 684 - -
Pte10g00977 684 SMART G9a_1 273 430 IPR003105 -
Pte10g00977 684 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 501 628 IPR013083 -
Pte10g00977 684 FunFam Predicted protein 105 215 - -
Pte10g00977 684 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 3 617 IPR045134 -
Pte10g00977 684 MobiDBLite consensus disorder prediction 621 662 - -
Pte10g00977 684 ProSitePatterns Zinc finger RING-type signature. 538 547 IPR017907 -
Pte10g00977 684 SMART PHD_3 14 61 IPR001965 -
Pte10g00977 684 ProSiteProfiles Zinc finger RING-type profile. 523 579 IPR001841 -
Pte10g00977 684 ProSiteProfiles Zinc finger PHD-type profile. 12 63 IPR019787 -
Pte10g00977 684 MobiDBLite consensus disorder prediction 102 138 - -
Pte10g00977 684 ProSitePatterns Zinc finger PHD-type signature. 15 60 IPR019786 -
Pte10g00977 684 FunFam E3 ubiquitin-protein ligase ORTHRUS 2 249 444 - -
Pte10g00977 684 Pfam SAD/SRA domain 281 429 IPR003105 -
Pte10g00977 684 Coils Coil 589 623 - -
Pte10g00977 684 Pfam RING-type zinc-finger 523 576 IPR027370 -
Pte10g00977 684 Pfam Zinc finger, C3HC4 type (RING finger) 147 192 - -
Pte10g00977 684 SUPERFAMILY RING/U-box 142 214 - -
Pte10g00977 684 Gene3D - 249 447 IPR036987 -
Pte10g00977 684 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 97 217 IPR013083 -
Pte10g00977 684 SUPERFAMILY RING/U-box 516 604 - -
Pte10g00977 684 MobiDBLite consensus disorder prediction 102 132 - -
Pte10g00977 684 SUPERFAMILY FYVE/PHD zinc finger 6 66 IPR011011 -
Pte10g00977 684 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 69 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g00977 Pte-Chr10 24819870 24823079 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g00977 1 617 C2H2 Transcription Factor Family AT5G39550 62.158 0.0 754
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g00977 K10638 - qsa:O6P43_017375 906.746