Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g00974 ATGGCAAGTGACTTGCATGATAATCCGCAAGTTTCATGTAAGGGTGACTTATCTGTCAACTTTTCCGGTATCAACCCCAAAAAACCAAACTCTGCCTTACGTAAAGTTGCCAGAGTACGCTTAACCTCTGGATTTGAAATCACTGCTTATATACCTGGTATTGGCCATAATTTACAAGAGCATTCTGTAGTCTTAGTAAGAGGGGGAAGGGTTAAGGATTTACCCGGTGTGAGATATCACATTGTTCGAGGAACCTAG 258 0.4186 MASDLHDNPQVSCKGDLSVNFSGINPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGT* 86
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g00974 85 SUPERFAMILY Nucleic acid-binding proteins 17 85 IPR012340 -
Pte10g00974 85 Gene3D - 2 85 IPR012340 -
Pte10g00974 85 ProSitePatterns Ribosomal protein S12 signature. 27 34 IPR006032 GO:0003735|GO:0005840|GO:0006412
Pte10g00974 85 CDD Ribosomal_S12 26 85 IPR005679 GO:0003735|GO:0006412|GO:0015935
Pte10g00974 85 PRINTS Ribosomal protein S12 signature 42 61 IPR006032 GO:0003735|GO:0005840|GO:0006412
Pte10g00974 85 PRINTS Ribosomal protein S12 signature 26 41 IPR006032 GO:0003735|GO:0005840|GO:0006412
Pte10g00974 85 PRINTS Ribosomal protein S12 signature 61 78 IPR006032 GO:0003735|GO:0005840|GO:0006412
Pte10g00974 85 PRINTS Ribosomal protein S12 signature 78 85 IPR006032 GO:0003735|GO:0005840|GO:0006412
Pte10g00974 85 NCBIfam 30S ribosomal protein S12 5 85 IPR005679 GO:0003735|GO:0006412|GO:0015935
Pte10g00974 85 PANTHER 30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER 21 84 IPR006032 GO:0003735|GO:0005840|GO:0006412
Pte10g00974 85 Pfam Ribosomal protein S12/S23 17 83 IPR006032 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g00974 Pte-Chr10 24706417 24707122 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g00974 23 83 Cytoplasmic Ribosomal Protein Gene Family AT3G09680 44.928 8.19e-10 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g00974 K02950 - soe:130461791 141.739