Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g00954 ATGGATTCTTTAAGCAGAACAGCTGTTTCACCAGTTACAAGTCCAGGAGGTACTTTATTTGGTTCTCATGTTCATAGTTCTGATGCTAGTTTTCCCATTATAGCCATTGCTGTGATTGGGATTTTGGCAACAGCTTTCCTGCTCGTGAGTTACTACATCTTCGTCATCAAGTGCTGTCTCACTTGGCACAGAATCGATCTTCTGAGACGTTTCTCACTATCAAGGAGACGTGAAGAGCCATTGGTTGTTTACACTGAGCATAGAGGACTGGATGAGGCAGTGATTCGATTAATCCCAGTGATTCAGTTCAAGAAAGAGGAAACCATAGAATCTGCGGAAAGAAGCTTTTGTGAATGTGCAGTTTGCTTGAATGAGTTTCAACAAGATGAGAAGCTAAGGATGATACCAAACTGCAGCCACGTTTTCCATATAGATTGCATTGATGTTTGGTTTCAGAACAACGCTAACTGTCCACTCTGCAGAACAAGCATTTCCCTGTCAACCCGATTCCAAATGAATCACATTCTCACTACAAGCCCTTCTCCCCAAGATCTTAGTCCATACAGTGACAACCTTATAGGTGGGGAAGAAGATTTTGTGGTGATTGAATTGGGTGGCGGAAATGGTACAGATCAAACATTGCTTGAAAAACATCAAAAGACGATGAAGCTTGTCAGTCCTTCACCAAGGAAATTAGAATTGAAAGTTGTGCAGCAGAAGAAGGTAAGCAAGATGCATAAGCTCACAAGTATGGATGATGATTGCATTGATAGAAGAGGCAAAGGTGAAAATTTTCTAGTTCAACCCATCAGAAGGTCCTTTTCAATGGATTCTTCAGGTGACAGACAGCTTTATTTGGCTGTACAAGAGGCTCTGCAACAGCAGAACAGGCAGCAAGCCATTGAGAACTCGTAA 915 0.4197 MDSLSRTAVSPVTSPGGTLFGSHVHSSDASFPIIAIAVIGILATAFLLVSYYIFVIKCCLTWHRIDLLRRFSLSRRREEPLVVYTEHRGLDEAVIRLIPVIQFKKEETIESAERSFCECAVCLNEFQQDEKLRMIPNCSHVFHIDCIDVWFQNNANCPLCRTSISLSTRFQMNHILTTSPSPQDLSPYSDNLIGGEEDFVVIELGGGNGTDQTLLEKHQKTMKLVSPSPRKLELKVVQQKKVSKMHKLTSMDDDCIDRRGKGENFLVQPIRRSFSMDSSGDRQLYLAVQEALQQQNRQQAIENS* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g00954 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 79 166 IPR013083 -
Pte10g00954 304 CDD RING-H2_EL5-like 118 161 - -
Pte10g00954 304 PANTHER RING-H2 FINGER PROTEIN ATL16 23 299 IPR044600 GO:0016567|GO:0016740
Pte10g00954 304 SMART ring_2 119 160 IPR001841 -
Pte10g00954 304 SUPERFAMILY RING/U-box 118 175 - -
Pte10g00954 304 ProSiteProfiles Zinc finger RING-type profile. 119 161 IPR001841 -
Pte10g00954 304 FunFam E3 ubiquitin-protein ligase ATL6 80 167 - -
Pte10g00954 304 Pfam Ring finger domain 118 161 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g00954 Pte-Chr10 23467401 23470318 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g00954 26 298 C3H Transcription Factor Family AT1G04360 54.248 1.04e-102 304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g00954 - - jre:109007064 379.793