Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g00950 ATGACAACAGATTTTTCACAGAAAATGGAAAACATTCTTAGTCTTTGTTACAAGGAGGATGAACCGATGGACTTGCCACCTGGATTTCGGTTTCACCCTACAGATGAAGAGCTCATAAGTCATTACCTGCACCCCAAGGTTATCAACATCAACTTCTCTTGCAAAGCCATTGGATTTGTGGACTTGAACAAGTCTGAGCCCTGGGACTTGCCATGGAAAGCAAACATGGGAGAAAAAGAGTGGTACTTTTTTTGTGTCAGAGACAGAAAGTATCCAACAGGTTTGAGAACCAACAGAGCCACTGAAGCTGGATACTGGAAAGCAACAGGGAAAGACAAGGAGATCTACAAAGGAACATCACTAGTTGGAATGAAGAAAACTTTGGTTTTCTACAGAGGCAGAGCACCTAAAGGAGAAAAAACCAATTGGGTTATGCATGAGTACAGATTAGATGGTAAGCTCTCAGTTCACAACCTTCCCAAAACTGCAAAGAATGAATGGGTGATAAGCAGAGTGTTTCAGAAAACTATAGGTGGAAAGAAGACTCATATTTCTGGGATAATGAGATTAGGTTCTTATGTAAATGAATTGGGTCCTTCTGGTTTACCAACACTAATGGATTCCTCTTCTCCTCAAATTGTCAATACTAAGCCGTTGGCCGAATCGGCCTACGTGCCCTGCTTCTCCAACTCAATGAATGTTCAAAGAAACCAAGGAGGGATGGTTGATAATTGCTTCAACAACCCTCTTACTATGGTTTCTTCAAATCCTTCCGTGACTCTTCCAAGGGTTCGGCTATCCAGTTCATTTTATTCTACTACTCAAAGCAACCCATTCCCAGAAAGCTTTTCAGTATCTGGTTCTGTTTATGATGTGCAAGACGACTCATTTCTCAGGACTTTCCTTCAGAACCATGGAACCAACATGAGGAATTTGAAAACAGAAAGGGATATGGCAAGTCTCTCTCAAGAAACAGGCCTGACAACAACAGCTGATATGAACGCTGAAATCTCTTCAATGGTATCAAATGTTGTAATGGGTAGGAGGCCATTTGCTCAGGAGGCACAGCCTATTTCAACTGCACCAGTAGAACTTGACACAGAGACATGGTGGAACTGTTGA 1122 0.4198 MTTDFSQKMENILSLCYKEDEPMDLPPGFRFHPTDEELISHYLHPKVININFSCKAIGFVDLNKSEPWDLPWKANMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYKGTSLVGMKKTLVFYRGRAPKGEKTNWVMHEYRLDGKLSVHNLPKTAKNEWVISRVFQKTIGGKKTHISGIMRLGSYVNELGPSGLPTLMDSSSPQIVNTKPLAESAYVPCFSNSMNVQRNQGGMVDNCFNNPLTMVSSNPSVTLPRVRLSSSFYSTTQSNPFPESFSVSGSVYDVQDDSFLRTFLQNHGTNMRNLKTERDMASLSQETGLTTTADMNAEISSMVSNVVMGRRPFAQEAQPISTAPVELDTETWWNC* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g00950 373 ProSiteProfiles NAC domain profile. 25 175 IPR003441 GO:0003677|GO:0006355
Pte10g00950 373 Gene3D NAC domain 34 178 IPR036093 GO:0003677|GO:0006355
Pte10g00950 373 FunFam NAC domain-containing protein 100-like 34 179 - -
Pte10g00950 373 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 24 274 - -
Pte10g00950 373 Pfam No apical meristem (NAM) protein 26 150 IPR003441 GO:0003677|GO:0006355
Pte10g00950 373 SUPERFAMILY NAC domain 22 175 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g00950 Pte-Chr10 23095066 23096899 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g00950 23 372 NAC Transcription Factor Family AT5G07680 57.062 4.22e-125 361
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pte10g00950 NAM 1e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g00950 - - tcc:18604731 504.597