Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g00947 ATGGGAAGGGTTAAACTGAAGATAAAGAGATTAGCAAACACTAGCAACCGCCAAATGACATATTCCAAACGGAGAAGTGGAATATTGAAGAAAGCTAAGGAATTGTCAATACTATGCGACGTAGAAATTGTCCTCCTTATGTTTTCTCCAACAGGAAGAGCTACCTTATTACAAGGAGAGCGCAGCAACATTGAAGATGTCATTTCAAAGTTTGCTCATCTAAGTCCACAAGAAAGGGCAAAAAGGAAACTGGAGAGCCTTGAAGCACTCAGGAAAACCTTCAAGAAGTTGGATCATGATGTAAGAATACAAGATTTCTTGGGATCAAGTGGCCAAATGGTAGAGGACCTAAGTCACCAAGTAAGGATTCAGCAAGCTCAAATTACCGAACTACATAAGAGACTGAGCTACTGGAGCAACCCAGAAAAGATCCATAATGTCGAACATCTTAGGCAGATGGAAGACTTGCTCAGGAAATCAATTAATGGAGTGCGCCAACACAAGGAAAATCTGGGAAAACGACAATTGTTTCCACTTGAAAGTTCTAGCCAGCAATTAGAGGATGGCATGTCTTTCACTATGGTGATGAGAGGGCTGCAAGAAGGCCAAAAGATGCCTTGGTTCATGAACCATGATAATCAACATATTATGTTAGCCAGTGAGCCAAGATTATTGTCGTATTGTGCCTCCAACGGAGCTACAGAGTGCTCAACTGATGCCTCACTGCCTTTCTATTCTAATTATTTTGGCAATGGAAAACAACTGGAGTTTGGAAACTCTACCCAATCTCACATGGGACAAGGAGGGGATACCTCGAATGATTTGAACAGAAATGATTGCTTAAGCCTTGATCTAGCAGAGCAGTTTGCATACTCTCCTTACGGTAGTCAAGCTATGTCTGATGATAAATCAAAACCTCCAATGGAGATGGACATGAAACATCAAATGGAAATGAACTTGAAGCTGAATCATGTCGCCTTTCAAGTGAACAGTAATGGCTTTGATCTTCCTATATCTATCTTTGAAAATGGTCAATCTTGGACCAATGCTTCTGGGCCTTATGGGGTTGCAATGTATAATGAGAATTCTTTCCACGGATGA 1101 0.4105 MGRVKLKIKRLANTSNRQMTYSKRRSGILKKAKELSILCDVEIVLLMFSPTGRATLLQGERSNIEDVISKFAHLSPQERAKRKLESLEALRKTFKKLDHDVRIQDFLGSSGQMVEDLSHQVRIQQAQITELHKRLSYWSNPEKIHNVEHLRQMEDLLRKSINGVRQHKENLGKRQLFPLESSSQQLEDGMSFTMVMRGLQEGQKMPWFMNHDNQHIMLASEPRLLSYCASNGATECSTDASLPFYSNYFGNGKQLEFGNSTQSHMGQGGDTSNDLNRNDCLSLDLAEQFAYSPYGSQAMSDDKSKPPMEMDMKHQMEMNLKLNHVAFQVNSNGFDLPISIFENGQSWTNASGPYGVAMYNENSFHG* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g00947 366 Coils Coil 77 97 - -
Pte10g00947 366 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pte10g00947 366 FunFam Agamous-like MADS-box protein AGL30 14 96 - -
Pte10g00947 366 CDD MADS_SRF_like 2 82 IPR033897 GO:0000981|GO:0000987|GO:0045944
Pte10g00947 366 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Pte10g00947 366 Gene3D - 13 96 IPR036879 GO:0003677|GO:0046983
Pte10g00947 366 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 215 - -
Pte10g00947 366 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pte10g00947 366 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pte10g00947 366 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pte10g00947 366 Coils Coil 114 134 - -
Pte10g00947 366 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 54 IPR002100 GO:0003677|GO:0046983
Pte10g00947 366 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g00947 Pte-Chr10 22801600 22805126 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g00947 1 256 Type I MADS-box Gene Family AT2G03060 49.621 2.19e-83 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pte10g00947 SRF-TF 4.2e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g00947 - - qsa:O6P43_022860 472.241