Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g00930 ATGGCAGACGGCGAGCAGAATACCATCCATCCCCAGCGGCCAATCCAAAGGGACTTCTCTCATCGAAATCACAAGAAGTTCAATCACGGGCATTTCCCTGGGAAGAAGTTTTCACCTGGCCAGTTCAAATCAAATCAAGCTTTCAAGCCACCTTCAGGGCCAAATTCAACACCCAACTCTTCTCCAAATCCTTCCCTGTCTGGATTTAAGAGAAAAGAACCCGATGCTGATAATCAAGCTCCCCAGAAACATCAACCATTTAATGACAGTCCCAAACAAGCAAAAACAGATGACTCATATTGCCAGGTATGCCATGTCTCCTGCTCAGGACGGCTAGCCTTTCAGCAGCATTTAGTAGGGCGGAAGCACAAGGCGAAAACACAAGGTAACACAATCTATAAAGGGCCATGGAATTGTGATCAGTGTAAAATTTCCTGCACGTCTGAGAGACTGCTCATGAGTCATTTCCAAGGCCAAGTGCACCAAAATATGCTGAGGAAGTTGGAGTCAAGGAAGACTGAGGGTGGAGAGATGTCCACACAGAGGAAGTATTGCCATTTGTGTAAAATTTGGTGCATGGATGAACTAGGCTATGAACAACATGTTGAAGGCAAAAAACACATCTTCTCTGTTTTTACGAATGAGATTGAGAAGAAAGCCAGAGATGAAGCTGCAGCGCAGGCTGGAGTGGACCTTAATAAAATGGCTGGCTAA 714 0.4538 MADGEQNTIHPQRPIQRDFSHRNHKKFNHGHFPGKKFSPGQFKSNQAFKPPSGPNSTPNSSPNPSLSGFKRKEPDADNQAPQKHQPFNDSPKQAKTDDSYCQVCHVSCSGRLAFQQHLVGRKHKAKTQGNTIYKGPWNCDQCKISCTSERLLMSHFQGQVHQNMLRKLESRKTEGGEMSTQRKYCHLCKIWCMDELGYEQHVEGKKHIFSVFTNEIEKKARDEAAAQAGVDLNKMAG* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g00930 237 SUPERFAMILY beta-beta-alpha zinc fingers 132 171 IPR036236 -
Pte10g00930 237 SMART c2h2final6 183 207 IPR013087 -
Pte10g00930 237 SMART c2h2final6 137 161 IPR013087 -
Pte10g00930 237 SMART c2h2final6 99 123 IPR013087 -
Pte10g00930 237 SUPERFAMILY beta-beta-alpha zinc fingers 86 128 IPR036236 -
Pte10g00930 237 ProSitePatterns Zinc finger C2H2 type domain signature. 139 161 IPR013087 -
Pte10g00930 237 MobiDBLite consensus disorder prediction 1 95 - -
Pte10g00930 237 PANTHER ZINC FINGER RNA-BINDING PROTEIN 73 170 - -
Pte10g00930 237 Pfam Zinc-finger of C2H2 type 137 161 - -
Pte10g00930 237 Pfam Zinc-finger of C2H2 type 184 207 - -
Pte10g00930 237 Pfam Zinc-finger of C2H2 type 100 123 - -
Pte10g00930 237 SMART ZnF_U1_5 96 130 IPR003604 GO:0003676|GO:0008270
Pte10g00930 237 SMART ZnF_U1_5 134 168 IPR003604 GO:0003676|GO:0008270
Pte10g00930 237 SMART ZnF_U1_5 180 220 IPR003604 GO:0003676|GO:0008270
Pte10g00930 237 MobiDBLite consensus disorder prediction 81 95 - -
Pte10g00930 237 SUPERFAMILY beta-beta-alpha zinc fingers 173 208 IPR036236 -
Pte10g00930 237 Gene3D Classic Zinc Finger 132 173 - -
Pte10g00930 237 Gene3D Classic Zinc Finger 174 215 - -
Pte10g00930 237 Gene3D Classic Zinc Finger 87 131 - -
Pte10g00930 237 MobiDBLite consensus disorder prediction 39 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g00930 Pte-Chr10 21885275 21887265 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte10g00930 zf-met 0.0021 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g00930 - - qsa:O6P43_001991 138.658