Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g00922 ATGAGAAAAAGAAGGGTATGGCTAGGAACATTTGAAAGTGCTGAAGAAGCAGCCCAAGCATATGATGAGGCTGCTATCTTGATGAATGGTAGAAGTGCCAAAACAAACTTTCTAGAAGCCAAAACTGATATAGAAAACGAAAGGAAAACTCCTTCATCTTATTCTTCTGCTGTTCTCAGTGCAAACCTTAGAAATGTTATTGCAAATTCCCTTCTCCTTCTCTCACTTATCTAA 234 0.3803 MRKRRVWLGTFESAEEAAQAYDEAAILMNGRSAKTNFLEAKTDIENERKTPSSYSSAVLSANLRNVIANSLLLLSLI* 78
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g00922 77 SMART rav1_2 1 44 IPR001471 GO:0003700|GO:0006355
Pte10g00922 77 PIRSF PTI6 1 73 IPR017392 GO:0003700
Pte10g00922 77 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 2 66 - -
Pte10g00922 77 ProSiteProfiles AP2/ERF domain profile. 1 38 IPR001471 GO:0003700|GO:0006355
Pte10g00922 77 Gene3D AP2/ERF domain 1 39 IPR036955 GO:0003700|GO:0006355
Pte10g00922 77 Pfam AP2 domain 2 30 IPR001471 GO:0003700|GO:0006355
Pte10g00922 77 CDD AP2 1 37 IPR001471 GO:0003700|GO:0006355
Pte10g00922 77 SUPERFAMILY DNA-binding domain 2 38 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g00922 Pte-Chr10 21760240 21776345 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g00922 3 37 AP2-EREBP Transcription Factor Family AT1G15360 82.857 1.35e-16 68.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pte10g00922 AP2 7.8e-07 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g00922 - - oeu:111387518 72.4034