Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g00920 ATGGAGATCACTGAGGAGCAGAAAAGACGAGCCGAAGCGAACCGTTTGGCAGCTCTTGCAAAACGTAAAGGACGTTTAGAAAAAGATTCCAATGAGGTTGAGCAACAGCAAGATGCATGGAAGCTATTCAAATGTAGCAAGTTCTCCCTTGAACACTGCAAATCCACAATTAGCTTATGCAGCCAACAACCGAAAATCATATCGGCCGAACCGGATTTTAAAACCTCTTTTCCTGATAAATTCCTGGTGAGGCTTGAAATTTGCTCTCCGGACTCTTTCTCAGTGACCCCACTTCACTGTAAGGGTTTTCCGTACCCCGGGGAGGAAGACTGTTTGGTTAGACTGACTGAGTGTTTGTCTGAGTTAATGCCATCGCACTACACTCAAAACCACGATGGTGGGAAGGCCTGTGTGTACAAGCTCAGTGATTATCGTGCTGTTGTGAAGTGTCTGAAGATGTCTGCAGCCATTGAGGTTGAAGAAATTCCTTGGCGAACTTTCAATGTTGTTGAGCGATGTTCGCATTCCTATACTGCAGGGTGCTGGATACCCTGTAATTCTGAGCACTTGCCTGATGACAAGGTTGATGAATTGATTGGGAAGCTACCGAAAAAGCTTTTGGATGTATTGTTGCCCTTCCAACTAGAGGGTTTGAGATTTGGTTTGAGAAGGGGTGGACGCTGTCTTATTGCTGATGAAATGGGCCTGGGTAAAACACTCCAGGCCATTGCTATTGCAGGATGTTTCATGGATGAAGGTTCTATACTTGTTGTTTGCCCTGCGATTCTTCGTTATTCTTGGGCAGAAGAACTAGAGCGTTGGCTTCCCTTTTGTGTGCCTTCTGATATTCATTTGGTTTTTGGCCATCAAAATAATCCTTCCAATTTGATAAGATGCCCTCGGGTTGTTGTTATCTCTTACAAAATGCTCCATCACTTATGGAAAAGCATGCTTCAGCAACACTGGGCTCTCATGATTGTCGATGAATCTCATCATGTGCGATGTACTAAGAAATCAGAACCAAGAGAGATAAAATCAGTTCTTGATGTCGCATCAAAGGTTAAGCGTGTAGTTCTACTTTCAGGGACACCTTCTTTGTCAAGGTTACCGTTTGACATCTATCACCAGATAAACTTATTATGGCCAGGTCTGCTTGGAGACACCAAGTATCATTTTGCAAAAACATATTGTGATGTCAAATTTGTCCATGATTGTCAAGGAAAATCTTCTAAGGACTTTTCAAAGGGTATTCGTTTGGAGGAGTTGAACGTGTTACTGAAGCAGACTGTTATGATAAGACGTTTAAAGGAACATGTCTTGCTCCAATTGCCACCAAAGCGTCGTCAAATCATAAGATTGCTATTGAAGGAATCTGATATAAGTGCCGCAAAAATTGCTAATGCAGCATCTAATTCCAATGTTCCTGAAGATGCAACTTTGGAAATTTCAGATGATTATGGTGATGTTGGAGGCTGTAAACTAGGGAAACTCTCATTCCAAGAATTGGGTATTGCAAAGCTTTCTGGGTTTCGTGAGTGGCTGTCTCTTCATCCGCTCATTGTGGATTCTGAATTTTTATTTGAGAAAGAGATATCTTATATCCGTATTGATGGAAATACGCTTGCCAAAGATAGACAGACCAAAGTAATGATGTTCCGGTCATCAGCAGAGGTTAAAATAGCAATCATAGGTATAAAAGCAGCAAAAGAGGGGCTTGATCTCTCGTCAGCTCAAAATGTTGTGTTCCTGGAGCTACCTCAGTGCCCTAATGACATGTTGCAGGCTGAAGCTAGAGCTCATAGGAGAGGGCAAAATAATGCAGTCAATGTATACATCTTCTGCGCAAAGGATACTGCAGATGAGCCCCATTGGCAAAAAATGAACAGAAGTTTGCACCTTGTTTCTTTTACGACCAATGGTAAATATGATGCAATAAAGGAGATTGAGGTTGAAGGTGTTTCTTATTTAGAAACATCCGAAAAGACCGTTGCAGATGGTGAAGACAAGTGCTTGGGGGACAGTATGTCCACAGAAGCCGTGGTAACATTGAAAGATTTAGCAAACACCAAATCCATGCATTTGCAACCCTTTCAAAGAGAATCTGTTGTTTCAGCATCGATATCGGACAATGAGTCAGATTGTTTGAGTGCCAGTAGAAGTTTAATCCAGAAATCAAACCTTTGCATTATGGACGATATGCCTGGGACAGAGATATACAAGGGTTCTTCATCGGATACAAATCTTGATGGTCAAAGTAGTGAACCTAAAAAACACTGTTCTGAGATCTTTGTTCCTTCAGAACTGGGTGAAGTTGGTGATGACAAACAAAAGTTAAGCGAGTACAAATTTAGTTCTCATAAAAAAGAAATAGATGGAAACCTACCAGTTCAGCCCATTAAAGCTTCTGCAAGTTGCTGTAACCTAGCTGACATACTGCGGTTCGAGGTAAGCCAATATACTGGAAGGATCCATTTGTATGCTTGCGTTTCAGAAACAGATGCACGGCCAAAACCACTTTATGAAAATTTCCGCCCAGAGGAAGTGGAATCCTTAAGTAGTACAGCTGTTGGTGGAGAAGGACTGAGCTTTGCATTATTTGAGGACAAACCAGATCGTGGAATTGTCCTTCTCAAATTCATCAAACAATGGAATAGCTTAAGGCCTATCGAGCGGAAAAAATTAATGGGAAAACCATTACAACTTCCCTTGGCTTCAGAATTGTTCTTCCTAAGTGAAAGTAGTAACCATAATCACGAGGGGCTATTGAAAGGTAGAAGCAAGAGGCGTGTGACACCCATTGTTGAGATTAGCTTTCCTTTACCACCAGATGCTGAATGGAAGAAAGTCCAGCTGCGTGGCTGCTATGGGAAAAAGGGAAAAGAGTATGCTCAAGGTTGGACTGTGACAGATGACCCACTTTGTAAGTTTTGTCAGAAGCCGTGCATGGGTAATAATGCAAAGGCACCTGAATTCTTTGAGGATCTTTTCTGTAACCTTGACTGCTATGAGGAGTATCGAATAAGGACTAGTACAAGATCACTGCGTTGGGAACTTTTCCAGATTGAACATGGTGTGTGCACGAATTGCAATTTAGACTGCCATAAACTGGTGGAGTGCATAAGACCTCTGTCATCAGCCAAGCGACGGGGTTATATTGACAAAGTAGCTCCAAATGTTGCGAAGCATAAGAACTTACTGGAGAAGCTTGTCAATGATCCATCTGAGGGCAACGCTTGGCATGCAGATCATATAGTTCCTGTCTATAAAGGGGGAGGTGAATGCAGATTAGAAAATATGAGAACTCTCTGTGTGGCATGTCACAGTGATGTCACTGCAGCACAAGGTGCTGAGCGACGGTTGATTAACGCCAAGGCTAAGAAACAACTAAAAATGACTTTGACTGAATTGAGAATGAGAAACGGTCAGATCCTTGATGCCACAGAGAATAGCATGAAGGGCTGTGGACTACAAGAGGATAACTCGGAGGATGAGCTTCTCGTGGAAGTTCCTGGGAGTGCCTATTCTGCCGCTCAATCCTAA 3540 0.4243 MEITEEQKRRAEANRLAALAKRKGRLEKDSNEVEQQQDAWKLFKCSKFSLEHCKSTISLCSQQPKIISAEPDFKTSFPDKFLVRLEICSPDSFSVTPLHCKGFPYPGEEDCLVRLTECLSELMPSHYTQNHDGGKACVYKLSDYRAVVKCLKMSAAIEVEEIPWRTFNVVERCSHSYTAGCWIPCNSEHLPDDKVDELIGKLPKKLLDVLLPFQLEGLRFGLRRGGRCLIADEMGLGKTLQAIAIAGCFMDEGSILVVCPAILRYSWAEELERWLPFCVPSDIHLVFGHQNNPSNLIRCPRVVVISYKMLHHLWKSMLQQHWALMIVDESHHVRCTKKSEPREIKSVLDVASKVKRVVLLSGTPSLSRLPFDIYHQINLLWPGLLGDTKYHFAKTYCDVKFVHDCQGKSSKDFSKGIRLEELNVLLKQTVMIRRLKEHVLLQLPPKRRQIIRLLLKESDISAAKIANAASNSNVPEDATLEISDDYGDVGGCKLGKLSFQELGIAKLSGFREWLSLHPLIVDSEFLFEKEISYIRIDGNTLAKDRQTKVMMFRSSAEVKIAIIGIKAAKEGLDLSSAQNVVFLELPQCPNDMLQAEARAHRRGQNNAVNVYIFCAKDTADEPHWQKMNRSLHLVSFTTNGKYDAIKEIEVEGVSYLETSEKTVADGEDKCLGDSMSTEAVVTLKDLANTKSMHLQPFQRESVVSASISDNESDCLSASRSLIQKSNLCIMDDMPGTEIYKGSSSDTNLDGQSSEPKKHCSEIFVPSELGEVGDDKQKLSEYKFSSHKKEIDGNLPVQPIKASASCCNLADILRFEVSQYTGRIHLYACVSETDARPKPLYENFRPEEVESLSSTAVGGEGLSFALFEDKPDRGIVLLKFIKQWNSLRPIERKKLMGKPLQLPLASELFFLSESSNHNHEGLLKGRSKRRVTPIVEISFPLPPDAEWKKVQLRGCYGKKGKEYAQGWTVTDDPLCKFCQKPCMGNNAKAPEFFEDLFCNLDCYEEYRIRTSTRSLRWELFQIEHGVCTNCNLDCHKLVECIRPLSSAKRRGYIDKVAPNVAKHKNLLEKLVNDPSEGNAWHADHIVPVYKGGGECRLENMRTLCVACHSDVTAAQGAERRLINAKAKKQLKMTLTELRMRNGQILDATENSMKGCGLQEDNSEDELLVEVPGSAYSAAQS* 1180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g00920 1179 Coils Coil 1 36 - -
Pte10g00920 1179 Pfam Helicase conserved C-terminal domain 525 603 IPR001650 -
Pte10g00920 1179 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 320 656 IPR027417 -
Pte10g00920 1179 Gene3D - 187 432 IPR038718 -
Pte10g00920 1179 SMART ultradead3 206 391 IPR014001 -
Pte10g00920 1179 Gene3D - 512 683 IPR027417 -
Pte10g00920 1179 CDD HNHc 1071 1111 IPR003615 -
Pte10g00920 1179 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 197 434 IPR027417 -
Pte10g00920 1179 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 219 382 IPR014001 -
Pte10g00920 1179 CDD SF2_C_SNF 524 614 - -
Pte10g00920 1179 Pfam SNF2-related domain 228 460 IPR000330 GO:0005524|GO:0140658
Pte10g00920 1179 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 5 1128 - -
Pte10g00920 1179 FunFam SNF2 DNA repair protein, putative 184 433 - -
Pte10g00920 1179 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 498 651 IPR001650 -
Pte10g00920 1179 Pfam HNH endonuclease 1077 1111 IPR002711 GO:0003676|GO:0004519|GO:0008270
Pte10g00920 1179 Gene3D - 999 1136 - -
Pte10g00920 1179 SMART helicmild6 520 603 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g00920 Pte-Chr10 21740001 21756281 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g00920 510 656 RAD5 or RAD16-like Gene Family AT1G61140 32.886 8.70e-12 67.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pte10g00920 SNF2_N 1e-25 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g00920 K25861 - qsa:O6P43_001998 1368.6