Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g00912 ATGTGCAGTGAGCTTCCAGGCTTCCATTTGAGCAGAAGCATGAGTGATCACCTGGTTTTGTGTGTTGACCGGCTCATAATTTCTGAAAGTTTGCCATCTTTGGAAGAAGGAGCTGTGACCTCTGAAGTCCCAGGGCCATCCAAAGATGCTTCCACCGTTCTAATTACTGATTCCCCTTCTTCTGCTGATGATGTCGATAAAGTTATGGAGGAGGATGCCCTAGAAGAAGAGCAGCCTCTGATTCATTCGGCGGAGTGCCGCATTTGCCAGGAGGAGGATAGCATTAAGAATTTTGAGATTCCTTGCGCTTGCACTGGCAGCTTGAAGTTTGTTCATAGGAAATGCGTCCAACGATGGTGCACTGAGAAAGGAAATGCAATTTGTGAGATCTGTAATCAGCCCTATCAACCAGGCTATACCGCCCCACCACCTTCTCAGCCAGAAGATGCTTCTACAATTGATATCAGGAAATACTTGCTGACTCATCCCTTATTTTGA 498 0.4639 MCSELPGFHLSRSMSDHLVLCVDRLIISESLPSLEEGAVTSEVPGPSKDASTVLITDSPSSADDVDKVMEEDALEEEQPLIHSAECRICQEEDSIKNFEIPCACTGSLKFVHRKCVQRWCTEKGNAICEICNQPYQPGYTAPPPSQPEDASTIDIRKYLLTHPLF* 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g00912 165 ProSiteProfiles Zinc finger RING-CH-type profile. 78 138 IPR011016 GO:0008270
Pte10g00912 165 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 14 148 IPR033275 -
Pte10g00912 165 CDD RING_CH-C4HC3_MARCH 86 132 - -
Pte10g00912 165 MobiDBLite consensus disorder prediction 45 59 - -
Pte10g00912 165 MobiDBLite consensus disorder prediction 36 63 - -
Pte10g00912 165 Pfam RING-variant domain 86 131 IPR011016 GO:0008270
Pte10g00912 165 SMART ringv_2 85 132 IPR011016 GO:0008270
Pte10g00912 165 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 141 IPR013083 -
Pte10g00912 165 SUPERFAMILY RING/U-box 83 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g00912 Pte-Chr10 21279640 21281432 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g00912 85 135 C3H Transcription Factor Family AT2G22120 42.593 4.27e-07 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g00912 - - pvy:116122299 189.119