Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pte10g00912 | ATGTGCAGTGAGCTTCCAGGCTTCCATTTGAGCAGAAGCATGAGTGATCACCTGGTTTTGTGTGTTGACCGGCTCATAATTTCTGAAAGTTTGCCATCTTTGGAAGAAGGAGCTGTGACCTCTGAAGTCCCAGGGCCATCCAAAGATGCTTCCACCGTTCTAATTACTGATTCCCCTTCTTCTGCTGATGATGTCGATAAAGTTATGGAGGAGGATGCCCTAGAAGAAGAGCAGCCTCTGATTCATTCGGCGGAGTGCCGCATTTGCCAGGAGGAGGATAGCATTAAGAATTTTGAGATTCCTTGCGCTTGCACTGGCAGCTTGAAGTTTGTTCATAGGAAATGCGTCCAACGATGGTGCACTGAGAAAGGAAATGCAATTTGTGAGATCTGTAATCAGCCCTATCAACCAGGCTATACCGCCCCACCACCTTCTCAGCCAGAAGATGCTTCTACAATTGATATCAGGAAATACTTGCTGACTCATCCCTTATTTTGA | 498 | 0.4639 | MCSELPGFHLSRSMSDHLVLCVDRLIISESLPSLEEGAVTSEVPGPSKDASTVLITDSPSSADDVDKVMEEDALEEEQPLIHSAECRICQEEDSIKNFEIPCACTGSLKFVHRKCVQRWCTEKGNAICEICNQPYQPGYTAPPPSQPEDASTIDIRKYLLTHPLF* | 166 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pte10g00912 | 165 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 78 | 138 | IPR011016 | GO:0008270 | |
Pte10g00912 | 165 | PANTHER | RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING | 14 | 148 | IPR033275 | - | |
Pte10g00912 | 165 | CDD | RING_CH-C4HC3_MARCH | 86 | 132 | - | - | |
Pte10g00912 | 165 | MobiDBLite | consensus disorder prediction | 45 | 59 | - | - | |
Pte10g00912 | 165 | MobiDBLite | consensus disorder prediction | 36 | 63 | - | - | |
Pte10g00912 | 165 | Pfam | RING-variant domain | 86 | 131 | IPR011016 | GO:0008270 | |
Pte10g00912 | 165 | SMART | ringv_2 | 85 | 132 | IPR011016 | GO:0008270 | |
Pte10g00912 | 165 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 71 | 141 | IPR013083 | - | |
Pte10g00912 | 165 | SUPERFAMILY | RING/U-box | 83 | 136 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pte10g00912 | Pte-Chr10 | 21279640 | 21281432 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pte10g00912 | 85 | 135 | C3H Transcription Factor Family | AT2G22120 | 42.593 | 4.27e-07 | 46.6 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pte10g00912 | - | - | pvy:116122299 | 189.119 |