Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g00905 ATGTACCCTTCTTCTACGTCTTCATCTTCTCAAAACCCAATGGCGTCAACTGGGTTGACCCGCTATGTTTCAGCACCAGGGTCTCTGCTAAGCACGGCAGCTGATGCGGTGGTTGGAGCTGAGAGTGAACTTGTTGCAATCGAATCAAGGTCTATTAGGGGTCAATACTTCTCTGGTGACTCGTCTTCTGTAACCTCAGAGTCAAGTTGTGAGATCAAACATTCTTACAACAGCAGTAACACCACCACAGAGCACAAAGGCTTGCAGAGATCGTACGGCTTCAATGAAATGAATCTTCGCGATTTTACAACTGCTAGTCACTTGGAAAGCGTTGGTGTTGGGGTCGTTAATGCTGTTGGGGAGACATGTTCTTCTTCTTCGTCAGCTTTGCTTCGCCAAAGAAGTTCGCCAGCTGGATTCTTTAGCCATCTCGATGTTAATGCCCACAAGAATGGAGCTTCTGAAAATGTTTCAAGGGCAGCAGGGAGCTACAACAATTCTCAAGGTGGAGGTGATAGTGGGCATAAAGTGTCTAGTTTGAAGTCTCAGTTAAGCTTCACGGGTCAAGATTCTTCTTCTCAGGCATCCAAGATAAGCAGAAATGTGGATGGTATGACTTCCAACAGCAGCTGCCCTGCTTATGCCACCGCAAGCTTTGCCATGGAAGCCTGGGATCATTCTAACTCAATTTTCTTCTCCGCCCCTCCCAATAAAAGAGCAAAGAATTATGACGGAGACATTTTCTTCAATTCTTTAGAATCTCAGTTCAGTTTGCCACAAACATCTCTTGAGATGGATACAGTGGAGAGGCTGCTTAACATTCCTGAGGATTCTGTTCCATGTAAAATCCGTGCAAAACGTGGCTGCGCTACTCACCCACGCAGCATCGCAGAACGGGAAAGAAGGACTAGAATAAGTGGGAAGCTGAAAAAACTGCAGGAGCTCGTTCCTAACATGGATAAGCAAACAAGCTATGCTGACATGCTAGACTTGGCTGTTCAACATATCAAAGGCCTTCAAGGTCAAGTCCAGAATTTGCAGAAGGAAATGGAAAGTTGCGCATGTGGATGCAAAGAATGA 1080 0.4574 MYPSSTSSSSQNPMASTGLTRYVSAPGSLLSTAADAVVGAESELVAIESRSIRGQYFSGDSSSVTSESSCEIKHSYNSSNTTTEHKGLQRSYGFNEMNLRDFTTASHLESVGVGVVNAVGETCSSSSSALLRQRSSPAGFFSHLDVNAHKNGASENVSRAAGSYNNSQGGGDSGHKVSSLKSQLSFTGQDSSSQASKISRNVDGMTSNSSCPAYATASFAMEAWDHSNSIFFSAPPNKRAKNYDGDIFFNSLESQFSLPQTSLEMDTVERLLNIPEDSVPCKIRAKRGCATHPRSIAERERRTRISGKLKKLQELVPNMDKQTSYADMLDLAVQHIKGLQGQVQNLQKEMESCACGCKE* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g00905 359 MobiDBLite consensus disorder prediction 158 206 - -
Pte10g00905 359 Pfam Helix-loop-helix DNA-binding domain 294 340 IPR011598 GO:0046983
Pte10g00905 359 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 289 339 IPR011598 GO:0046983
Pte10g00905 359 SMART finulus 295 345 IPR011598 GO:0046983
Pte10g00905 359 FunFam Transcription factor bHLH130 family 290 358 - -
Pte10g00905 359 Coils Coil 329 349 - -
Pte10g00905 359 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 26 349 - -
Pte10g00905 359 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 292 353 IPR036638 GO:0046983
Pte10g00905 359 CDD bHLH_AtbHLH_like 294 347 IPR045239 -
Pte10g00905 359 Gene3D - 290 357 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g00905 Pte-Chr10 20231652 20246225 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g00905 18 359 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G05805 46.027 6.41e-82 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pte10g00905 HLH 5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g00905 - - qsa:O6P43_023660 417.542