Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g00860 ATGAATTGTACTCTGTTCCTTTTGACTCTGTTAGCTGCTTTTCATGTGACAGAAGCCAAGGTTGTTTTGATGGGAAGCAATGTCACTCTGTCCTTCGATGATATTGAAGCTAATTTTGCTCCTTCTGTTAAAGGATCTGGTGAATGTGGGGTACTGTATTTGGCGGAGCCTCTTGATGCATGTGCGCCGCTGACAAATAAAGCTGAACACCATCCAAATATTAGTCCTCTTTCGTTAATAATCAGAGGAGGATGCGACTTTGGGGACAAAGTTAGAAATGCACAAAAAGCTGGGTTTAAAGCTGCAATTATCTATGACAATGAAGATGATGGCACCTTGGTATCAATGGCTGGTGATCCAAATGGCATTAGAATACCTGCTGTATTTATTACGGAGGTTTCCGGTGAAACACTAAAGAGATATGCAGGATTAACTAATTTGGAGATTTGCTTAATTTCCAGTTTTGAAAACATGGCATGGTCAATCGTGGGAATTTCATTCATTTCCCTACTTGCCATGCTTGCTGCGTTGGCCACATGTTTCTTCATTCGTAGGCATCACATAAGAAGAGAAAGGTCTCAAGCTTCTCGTGTTAGAGAATTTCATGTCATGAGTAAGCGGCTAGTGAAAGCAATGCCAAGTTTGATATTCTCTACTGTTTTGGAGGACAATTGTACATCAACAACATGCACCATATGTCTTGAAGACTATAATGAGGGAGAAAAGCTCAGAATTCTTCCATGTCGTCACAGTAAGTCTTTTCTTCCTCAACGATGTGGAATTTCAATATCTACTGCTACTCCATTATGTTAA 813 0.401 MNCTLFLLTLLAAFHVTEAKVVLMGSNVTLSFDDIEANFAPSVKGSGECGVLYLAEPLDACAPLTNKAEHHPNISPLSLIIRGGCDFGDKVRNAQKAGFKAAIIYDNEDDGTLVSMAGDPNGIRIPAVFITEVSGETLKRYAGLTNLEICLISSFENMAWSIVGISFISLLAMLAALATCFFIRRHHIRRERSQASRVREFHVMSKRLVKAMPSLIFSTVLEDNCTSTTCTICLEDYNEGEKLRILPCRHSKSFLPQRCGISISTATPLC* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g00860 270 Gene3D - 11 148 - -
Pte10g00860 270 CDD PA_C_RZF_like 16 157 IPR044744 -
Pte10g00860 270 FunFam Receptor homology region transmembrane domain-and RING domain-containing protein 2 19 152 - -
Pte10g00860 270 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 259 IPR013083 -
Pte10g00860 270 SUPERFAMILY RING/U-box 220 251 - -
Pte10g00860 270 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 149 250 - -
Pte10g00860 270 SUPERFAMILY PA domain 79 134 IPR046450 -
Pte10g00860 270 Pfam RING-like zinc finger 230 250 IPR001841 -
Pte10g00860 270 Pfam PA domain 82 138 IPR003137 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g00860 Pte-Chr10 14121423 14123508 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g00860 13 250 C3H Transcription Factor Family AT1G22670 48.971 2.75e-69 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g00860 K15692 - cave:132189173 353.984