Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g00854 ATGAAAGGAGAGGCGAGGCGAGGTTGGGAGAAAGAGAGGCTGAGGGACAGAGAGATGAGTCGCAGGTGTGCTGAGAAACTAAAGATCTTACTTTGTTGCGTTATGTCGAGGAGCAGAAAGGTAAGGGAGCCTAAAGAAGAGAATGTCACTCTTGGACCCGCTGTTAGGGATGGTGAACAAGTTTTTGGTGTTGCACATATCTTTGCATCATTTAATGACACCTTCATACATGTCACTGATTTATCTGGGAGGGAAACCCTTGTTCGTATCACTGGTGGAATGAAGGTTAAAGCTGACAGAGATGAATCTTCTCCATATGCTGCTATGCTTGCAGCACAAGATGTTGCTGCTAGATGCAAGGAACTGGGCATTACTGCATTGCATATCAAACTTCGAGCCACAGGTGGGAACAAAACCAAAACACCTGGACCTGGCGCTCAGTCTGCTCTTCGTGCGCTTGCTCGTTCTGGGATGAAAATTGGCCGCATAGAGGATGTGACACCCATTCCGTCTGACAGCACCCGTAGAAAGGGTGGAAGAAGAGGAAGACGTCTCTAG 558 0.4785 MKGEARRGWEKERLRDREMSRRCAEKLKILLCCVMSRSRKVREPKEENVTLGPAVRDGEQVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVAARCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDSTRRKGGRRGRRL* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g00854 185 Hamap 30S ribosomal protein S11 [rpsK]. 26 182 IPR001971 GO:0003735|GO:0005840|GO:0006412
Pte10g00854 185 ProSitePatterns Ribosomal protein S11 signature. 150 172 IPR018102 -
Pte10g00854 185 Pfam Ribosomal protein S11 63 181 IPR001971 GO:0003735|GO:0005840|GO:0006412
Pte10g00854 185 SUPERFAMILY Translational machinery components 58 183 - -
Pte10g00854 185 MobiDBLite consensus disorder prediction 165 185 - -
Pte10g00854 185 Gene3D Ribosomal protein S11 35 185 IPR036967 GO:0003735|GO:0005840|GO:0006412
Pte10g00854 185 PANTHER 40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11 38 180 IPR001971 GO:0003735|GO:0005840|GO:0006412
Pte10g00854 185 FunFam 40S ribosomal protein S14 35 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g00854 Pte-Chr10 12904287 12906880 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g00854 39 174 Cytoplasmic Ribosomal Protein Gene Family AT3G52580 92.647 1.40e-92 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g00854 K02955 - qsa:O6P43_012957 259.61