Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g00834 ATGAAACGTGAGTACTATGAGATCTCTGATGATGAATGGTCTAACCATTCGTTCAAACCCTCACGAGTTCTCAAGAGCAAGAAAGCGACGTCGTTTTCTACTACTTCACCTCCTCCACCGATTGAGTCCTTTTCGTATGTACCTCCTAAGGTTCTGGACTCTGATCAAAACAGTGATGATTGTGTGGAAGTCTTGGAAAATCCAAACAGTTTCCGTGAAAACTTGGAGGAGAGCTTAGAGGATGAAGGTGTGGACATGGATGGAGATAGGTCCGTTGCTAATGCTGTGAATCGTGGTCGGCGGTTTGTTATTGACGATGAAGATGAAGAGGAAGGAAATGGTAGGAAATTTGACGAAGTCTACGAGATAAAGTCTTTGGAGGAAGAGGAACTCGTAGAAGAAGATGAGGAGGAGGAGGAGCAGGAAAGCAACGAGATGGTGCATGAAGATGATGTTGTCGGTAAGGCTTTGCAGAAGTGTGCTAAGATATCGGCAGATTTAAGACGAGAGCTGTACGGTTCTTCTTCTGTCACTGCTTACGAGGGTTATTCTGAAGTTGAGACTGCTTCAGTCAGAATTGTGACTCAGGATGATATTGATGCTGCATGTGGTTCTGGGGATTCAGATTTTCAGCCTGTTCTTAAGCCATACCAGTTAGTTGGTGTTAACTTTCTAATTCTGTTGTACCGAAAGGGAATTGGTGGAGCTATATTGGCTGATGAAATGGGTCTTGGCAAGACAATCCAGGCCATCACATATTTAACATTGTTGAAACACTTGAATAATGATCCCGGTCCACATCTCATAGTATGCCCTGCTTCTGTTTTGGAAAACTGGGAAAGAGAGCTTAAAAGGTGGTGCCCTTCATTTTCGGTTATCCAGTATCATGGGGCTGGGAGAGCAGCATACTCGAAGGAGTTAAACTATCTATCCAAAGCTGGAATGCCCCCACCATTTAATGTTCTCCTTGTGTGTTACTCACTCTTTGAACGACACAGTGCACAACAAAAAGATGATCGCAAAATTCTGAAGCGATTGAGATGGAGCTGTGTTCTGATGGACGAAGCTCATGCTTTAAAGGATAAAAACAGTTACAGGTGGAAGAATCTGATGAATGTTGCCCGAAATGCTAATCAGCGATTGATGTTGACTGGGACACCTTTACAAAATGACCTACATGAGTTGTGGTCATTGTTGGAGTTTATGCTGCCTGATCTTTTTGCTACTGGAGATGTTGACTTGAAAAAGTTACTCAATGCAGAAGATGTGGACTTAATTGTCCGCATGAAATCCATTCTTGGTCCATTCATATTGAGGCGGCTAAAGTCTGATGTGATGCAACAACTTGTGCCCAAAATACAGAGGGTTGAGTATGTTGTAATGGAAGAGCAACAGGAAAGAGCCTATAAAGAGGCCATTGAGGACTACCGTATAGCTTCACGAACTCGAATGGCAAATGGTTCAAAGAAAAAATCGAATAATATGACTGGAGTTCTTCCTCAGCGTCAAATAAGCAACTATTTTGTGCAATTCCGCAAGATTGCAAACCATCCATTGCTTGTAAGGCGTATATACAGTGATGAGGATGTTGTTCGCCATGCAAAAAAGTTATATCCCATGGGAGCTTTCGGTTTTGAGTGTTCCTTTGATAGAGCGGTTGAGGAACTCAAGAGTTATAATGACTACACTATTCATCGGCTTTTACTTCAATATGGTGTCACCGACAAAAAGGGGATTCTTCCAGATAAATGTGTTATGCTCTCTGCAAAATCTCGAACATTAGCAGAACTTCTTCCCTCGCTCAAGCAAAGTGGGCACCGAGTCTTGATCTTTAGTCAGTGGACATCAATGCTTGATATTTTAGAGTGGACTTTAGATGTTATTGGGATGAGCTACAGGCGATTGGATGGAAGCACCCAGGTAGCAGAGAGGCAGACTATAGTTGATACATTCAATAACGATACTTCCATATTTGCGTGCTTGCTTTCCACGAGAGCTGGAGGACAAGGCTTGAATTTAACTGGAGCTGACACTGTAGTAATTCATGACATGGATTTCAACCCACAGATTGATCGTCAGGCAGAAGACCGATGTCACCGCATTGGCCAGACAAAACCTGTGACCATTTACAGGCTGGTGACCAAGGGAACGGTTGATGAGAATGTGTATGAGATTGCTAAACGGAAGTTAGTTTTGGATGCTGCCGTTCTGGAATCTAATGCAGAGCTGGATAACGAAGGTGACATGCCTGAGAAGACAATGGGAGAGATACTTTCTTCATTATTGTTAGTTTAG 2295 0.4288 MKREYYEISDDEWSNHSFKPSRVLKSKKATSFSTTSPPPPIESFSYVPPKVLDSDQNSDDCVEVLENPNSFRENLEESLEDEGVDMDGDRSVANAVNRGRRFVIDDEDEEEGNGRKFDEVYEIKSLEEEELVEEDEEEEEQESNEMVHEDDVVGKALQKCAKISADLRRELYGSSSVTAYEGYSEVETASVRIVTQDDIDAACGSGDSDFQPVLKPYQLVGVNFLILLYRKGIGGAILADEMGLGKTIQAITYLTLLKHLNNDPGPHLIVCPASVLENWERELKRWCPSFSVIQYHGAGRAAYSKELNYLSKAGMPPPFNVLLVCYSLFERHSAQQKDDRKILKRLRWSCVLMDEAHALKDKNSYRWKNLMNVARNANQRLMLTGTPLQNDLHELWSLLEFMLPDLFATGDVDLKKLLNAEDVDLIVRMKSILGPFILRRLKSDVMQQLVPKIQRVEYVVMEEQQERAYKEAIEDYRIASRTRMANGSKKKSNNMTGVLPQRQISNYFVQFRKIANHPLLVRRIYSDEDVVRHAKKLYPMGAFGFECSFDRAVEELKSYNDYTIHRLLLQYGVTDKKGILPDKCVMLSAKSRTLAELLPSLKQSGHRVLIFSQWTSMLDILEWTLDVIGMSYRRLDGSTQVAERQTIVDTFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCHRIGQTKPVTIYRLVTKGTVDENVYEIAKRKLVLDAAVLESNAELDNEGDMPEKTMGEILSSLLLV* 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g00834 764 PANTHER SNF2/RAD54 HELICASE FAMILY 62 740 - -
Pte10g00834 764 CDD SF2_C_SNF 580 713 - -
Pte10g00834 764 CDD DEXHc_Snf 214 407 - -
Pte10g00834 764 MobiDBLite consensus disorder prediction 129 148 - -
Pte10g00834 764 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 593 755 IPR001650 -
Pte10g00834 764 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 346 741 IPR027417 -
Pte10g00834 764 Gene3D - 187 421 IPR038718 -
Pte10g00834 764 MobiDBLite consensus disorder prediction 24 58 - -
Pte10g00834 764 MobiDBLite consensus disorder prediction 129 146 - -
Pte10g00834 764 Pfam Helicase conserved C-terminal domain 590 702 IPR001650 -
Pte10g00834 764 FunFam Protein CHROMATIN REMODELING 19 isoform A 185 463 - -
Pte10g00834 764 SMART helicmild6 619 702 IPR001650 -
Pte10g00834 764 SMART ultradead3 210 415 IPR014001 -
Pte10g00834 764 Pfam SNF2-related domain 234 520 IPR000330 GO:0005524|GO:0140658
Pte10g00834 764 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 204 440 IPR027417 -
Pte10g00834 764 Gene3D - 451 762 IPR027417 -
Pte10g00834 764 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 227 405 IPR014001 -
Pte10g00834 764 Coils Coil 123 146 - -
Pte10g00834 764 MobiDBLite consensus disorder prediction 24 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g00834 Pte-Chr10 11713211 11719579 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g00834 235 729 RAD5 or RAD16-like Gene Family AT5G22750 27.987 1.39e-47 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pte10g00834 SNF2_N 4.1e-55 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g00834 K14439 - qsa:O6P43_026001 1181.78