Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g00833 ATGGCAGCAGCATCTTCATCACCAGGAGCTATGTTTGCTATCAGAGAGGAACAACAGAATCAGACAAACAGCCAACATTCCTCTGCACCTTCTTCCACAACTCCGGCAACCCCAACTGCTCAGAAGAAGAAAAGAAACCAGCCCGGCAATCCCAATCCTGATGCGGAAATCATCGCATTATCTCCAAAGACTTTAATGGCCACAAATAGATTTATCTGCGAGGTTTGCAACAAGGGCTTTCAAAGAGAACAAAACCTTCAGCTCCATCGAAGAGGACATAACCTTCCCTGGAAGCTCAAGCAAAAAACAACAAAAGAACCTAAGAGGAAGGTCTACCTTTGTCCAGAGCCTACTTGTGTCCACCATGACCCATCAAGGGCACTGGGGGACTTGACTGGCATCAAAAAGCACTATTCTCGCAAACATGGCGAGAAGAAGTGGAAGTGTGACAAGTGCGCCAAGAAGTACGCAGTTCAGTCAGATTGGAAGGCACATACGAAGACATGCGGAACAAGAGAATATCGATGTGACTGTGGTACTCTCTTTTCAAGGAGAGACAGCTTCATCACCCATAGGGCATTTTGTGATGCATTGGCCCAGGAGAGTGGTCGCCAGCCCCCCAATCTGAACAGCGCCATTGGTACCCACTTGTTTGGAGGTAGCAACGTGGGGTTAGGCTTATCTCAGGTGGGGCAGCCTCAGATGAGCTCAATCCAAGATCAGAACAACAACCAGGGTAGTGATATCTTGAGGCTAGGGGGTGCTGTTCGCTTTGATAATCTCCTTCCTCAATCCATTACTGGTTCATCATTTCGTTCTCAGCAGAATATGCCTGCGTTTTTCATGCATGAAGCAAATCAACAAAGCTATCATGATCATCATCCTCATCAATCACAACAAGGAATGATGCAAAGCAAGCAATTCCAAGGACTGATGCAAATGTCAGATATTCAGAACAGCGCAAGCAATTCTCCAAATGGTGCTAATCTCTTCAGCCTTCCGTTTCTCTCCAACACCAATGCCAACTGCCACAATAGCAACTTGCCATCTTCGGCAATGATCGTTACTGATCATCATTTCAATGCAGGCAATAGCAATGCTTCTGGTGGTCCCGGAAACAATGAAGGCAATAATTTTTTCACCGGCGGCAATGTTATCGGTGACCAAAGCTCTAGTGTGCCATCTCTTTACAGTACTTCTGCTATGCAAAATAATAGTGCTGCTCCTCCTACAGCCCTATGTCAAATGTCAGCCACTGCGCTCCTGCAGAAAGCTGCTCAGTTGGGCTCGTCCTCAAGCAACAACACAACCGCCTCACTTCTGAGAAGCTTTGGAAGCCCTTCATCATCGTCAAAAGCTGACAATAGAAACCTTGTCAGCCATGCAAACTACGGCGCCATGTTTGGCGGGAACGATAACAACTTCCAAGACTTGGTCAACTCTTTTGCCAATGCTGGTAGCTCTCCCATTCTGGAAAATGCAGCAGCTGGATTGAATGCTTATGAAGGCTTCGACACCGGTAGAGCTCATTTGAGACATGCAGTTAGCATTGGAGGGTCTGATCCACTGACCAGAGACTTCTTAGGTGTAGGGCAGGTTGTAAGGAGCATGAGTGGAGGTGGGGTTTCTCATATAGACCAGCGGCAGCCACAACCGCAGCAACAGCAACGTGGGGTGTCCACGAATTCCTTGGACTCTGAAAGAAATGCTGCGCCGTCAGCCCAAACTTTTGGAGTAGGAGGAAACTTTCACTGA 1755 0.4752 MAAASSSPGAMFAIREEQQNQTNSQHSSAPSSTTPATPTAQKKKRNQPGNPNPDAEIIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCAKKYAVQSDWKAHTKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESGRQPPNLNSAIGTHLFGGSNVGLGLSQVGQPQMSSIQDQNNNQGSDILRLGGAVRFDNLLPQSITGSSFRSQQNMPAFFMHEANQQSYHDHHPHQSQQGMMQSKQFQGLMQMSDIQNSASNSPNGANLFSLPFLSNTNANCHNSNLPSSAMIVTDHHFNAGNSNASGGPGNNEGNNFFTGGNVIGDQSSSVPSLYSTSAMQNNSAAPPTALCQMSATALLQKAAQLGSSSSNNTTASLLRSFGSPSSSSKADNRNLVSHANYGAMFGGNDNNFQDLVNSFANAGSSPILENAAAGLNAYEGFDTGRAHLRHAVSIGGSDPLTRDFLGVGQVVRSMSGGGVSHIDQRQPQPQQQQRGVSTNSLDSERNAAPSAQTFGVGGNFH* 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g00833 584 SUPERFAMILY beta-beta-alpha zinc fingers 70 167 IPR036236 -
Pte10g00833 584 MobiDBLite consensus disorder prediction 542 584 - -
Pte10g00833 584 Gene3D Classic Zinc Finger 125 203 - -
Pte10g00833 584 FunFam protein indeterminate-domain 12-like 50 118 - -
Pte10g00833 584 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 20 549 IPR031140 -
Pte10g00833 584 Gene3D Classic Zinc Finger 52 119 - -
Pte10g00833 584 MobiDBLite consensus disorder prediction 1 56 - -
Pte10g00833 584 MobiDBLite consensus disorder prediction 538 584 - -
Pte10g00833 584 MobiDBLite consensus disorder prediction 12 48 - -
Pte10g00833 584 SMART c2h2final6 147 167 IPR013087 -
Pte10g00833 584 SMART c2h2final6 112 142 IPR013087 -
Pte10g00833 584 SMART c2h2final6 71 93 IPR013087 -
Pte10g00833 584 Pfam Zinc-finger double-stranded RNA-binding 71 93 IPR022755 -
Pte10g00833 584 ProSitePatterns Zinc finger C2H2 type domain signature. 73 93 IPR013087 -
Pte10g00833 584 ProSiteProfiles Zinc finger C2H2 type domain profile. 71 93 IPR013087 -
Pte10g00833 584 FunFam protein indeterminate-domain 5, chloroplastic-like 125 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g00833 Pte-Chr10 11657624 11663244 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g00833 41 541 IDZ Gene Family AT2G02070 49.159 2.97e-140 418
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte10g00833 zf-C2H2_jaz 3.6e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g00833 K25870 - jre:109006348 659.062