Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g00820 ATGACTGGCAGATTGGATGGAACTGGTGACTCTGGTAGCCAGTCAGATGAGAGTTATCATTTTGAAAGGATCCATATAGAACCTATTTACGATGCTTTTGTGTGTCCATTAACAAAGCAAGTCATGCGCGATCCAGTTACTTTAGAAAATGGGCAAACCTTTGAACGCGAAGCTATTGAGAAGTGGTTCAAGGAATGCAAGGAGAGTGGACGCAAGTTAGTTTGTCCTTTGACGCTGAAAGAACTGAAAAGTATGGAATTGAATCCCAGTATAGCTTTGCGAAACACCATTGAAGAATGGACTGCAAGGAATGAAGCTGCTCAACTTGATATGGCTCGGAGGTCCTTAACTCTAGGGGGCGCAGAAAGTGAAATTTTACAGGCTCTGAAATATGTTCAATACATCTGCCAAAAGCCTCTGGCAAATCAGCATATTGCACATAATGAAGGACTGATAGCTATGATAATTGATATGCTAAAAAGCAGCAGCCGTAAAGTTCGTTGCAGAACTTTAGAAACCCTCAGAATTTTGGTGGAGAGTGATGAAGAAAATAAGGCAATGCTGGCTGAGGGGGATACGGTGCGCACAATTGTGAAGTTCCTGTCTCATGAACTTTCCCGAGAAAGAGAGGAAGCTGTCTCTTTGCTTTATGAACTCTCAACATCCGAGCTGTTGTGTGAGAAAATTGGTTCCATTAATGGAGCAATTCTAATATTGGTAGGAATGACAAGCAGCACATCAGAAGATCTCTCAACCGTGGTGAAGGCAGATAAAACGTTGGATAATTTAGAAAAGTGTGAGAACAATGTGCTTCAGATGGCTGAAAATGGAAGACTGAAGCCTTTGTTGACACGGCTCCTTGAAGGCCCTCCAGAAACCAAAATATCTATGGCAGGGTACCTTGGAGAGCTTGTTTTTAATAATGACATTAAAGTTCTTGTTGCAAGAACTGTCGGTTCATCTCTGATTGATATTATGAAAAGTGGAAATTTGCCATCAAGAGAAGCTGCTTTAAAGGCTCTAAATCAGATATCATCTTCTGAGCCAAGTGCAAAAATTTTGATAGAGGCAGGAATACTTCCTCCTCTTGTGAAAGACCTTTTCACTGTAGGTTCCAATCAGCTTCCTATGAGATTAAAAGAGGTAGCTGCAACAATTCTTGCCAATCTTGTCAGCTCGGGATATGACTTTGATTCCATTCCTGTAGGACCTAATCATCAGACTTTGGTGTCTGAAGACATTGTTCACAACTTACTCCAACTCATCAGCAACACTGGTCCAGCAATTGAGTGCAAACTTCTACAGGTTCTTGTTGGACTAACTAGTTCTCCAACTACAGTATTTAGTCTCGTTTCGGCTATTAAAAGTTCTGGTGCCGTTATTAGTTTAGTTCAATTTGTTGAGGCCCCACAGAAAGATTTGCGTGTAGCTTCCTTGAAACTTCTCCAGAATCTTTCTCCATACATGAGTATGGAACTAGCTGATGCCTTACGAGGTTCTATTGGACAGCTTGGTACACTTGTAAGAATTATATCAGAAAAAATTGGAATCAATGAAGAGCAGGCAGCAGCTGTTGGTCTGCTGGCTGATTTACCAGAAAGGGATTTAGGTCTTACTAGGCAGATGCTAGATGAAGGCGCTTTTCAACTGGTTGTCTCTAGAGTGATTAGCATCCGACAGGGTGAGACTAGAGGGAGCCGTTTTATGACACCATTTCTCGAAGGCCTTGTGAGGATTATGGCAAGAGTCACTTTTGTCTTGGCTGATGAGCCTGCTGCCCTTACACTTTGCCGAGAGTATAATTTTGCTGATGTATTCATTGAGATGCTTCAAGCCAATGGGCTTGACAATGTACAGATGGTTTCTGCAATAGCATTGGAGAACTTATCACAAGAATCCAAGAGTTTAACGAAGTTGCCGGAGTTTCCAACACCGGGATTTTGTGCATCAATTTTTCCATGTTTTAGCAAGCAGCCTGTTATAACAGGACTCTGCAAGATCCACCGAGGAACATGTTCTCTAAAAGACACATTTTGTCTTCTGGAAGGACAGGCCATTGGGAAGCTGATAGCTCTTTTGGATCACACAAATGAGAAAGTGGTCGAGGCAGCACTTGCTGCATTATCTACTCTGTTGGAAGATGGGGTTGACATAGAACAAGGGGTGACGATTCTGTGTGAAGCTGATGGAATCAAGCCTATAATTGATGTGTTACTTGAGAAACGGACAGAGAACTTGATGAGGAGAGCAGTATGGACAATGGAAAGAATATTGCGAAGTGAGAACATAGCATACGAGATTTCTGGAAATCGAAATGTGAGTACTGCACTTGTTGATGCCTTTCAAAATGGTGACTATACGACTAGGCAAATTGCTGAACGAGCTCTAAGGCATGTTGATAAGATACCCAACTTCTCAGGTTTCTTTCCAAACATGGCATAG 2442 0.4197 MTGRLDGTGDSGSQSDESYHFERIHIEPIYDAFVCPLTKQVMRDPVTLENGQTFEREAIEKWFKECKESGRKLVCPLTLKELKSMELNPSIALRNTIEEWTARNEAAQLDMARRSLTLGGAESEILQALKYVQYICQKPLANQHIAHNEGLIAMIIDMLKSSSRKVRCRTLETLRILVESDEENKAMLAEGDTVRTIVKFLSHELSREREEAVSLLYELSTSELLCEKIGSINGAILILVGMTSSTSEDLSTVVKADKTLDNLEKCENNVLQMAENGRLKPLLTRLLEGPPETKISMAGYLGELVFNNDIKVLVARTVGSSLIDIMKSGNLPSREAALKALNQISSSEPSAKILIEAGILPPLVKDLFTVGSNQLPMRLKEVAATILANLVSSGYDFDSIPVGPNHQTLVSEDIVHNLLQLISNTGPAIECKLLQVLVGLTSSPTTVFSLVSAIKSSGAVISLVQFVEAPQKDLRVASLKLLQNLSPYMSMELADALRGSIGQLGTLVRIISEKIGINEEQAAAVGLLADLPERDLGLTRQMLDEGAFQLVVSRVISIRQGETRGSRFMTPFLEGLVRIMARVTFVLADEPAALTLCREYNFADVFIEMLQANGLDNVQMVSAIALENLSQESKSLTKLPEFPTPGFCASIFPCFSKQPVITGLCKIHRGTCSLKDTFCLLEGQAIGKLIALLDHTNEKVVEAALAALSTLLEDGVDIEQGVTILCEADGIKPIIDVLLEKRTENLMRRAVWTMERILRSENIAYEISGNRNVSTALVDAFQNGDYTTRQIAERALRHVDKIPNFSGFFPNMA* 814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g00820 813 CDD RING-Ubox_PUB 30 87 IPR045210 -
Pte10g00820 813 Gene3D - 120 316 IPR011989 -
Pte10g00820 813 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 20 809 - -
Pte10g00820 813 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 115 IPR013083 -
Pte10g00820 813 Gene3D - 317 486 IPR011989 -
Pte10g00820 813 Gene3D - 574 803 IPR011989 -
Pte10g00820 813 Coils Coil 256 276 - -
Pte10g00820 813 SMART Ubox_2 32 100 IPR003613 GO:0004842|GO:0016567
Pte10g00820 813 SUPERFAMILY ARM repeat 322 798 IPR016024 -
Pte10g00820 813 Pfam U-box domain 31 105 IPR003613 GO:0004842|GO:0016567
Pte10g00820 813 SUPERFAMILY ARM repeat 122 444 IPR016024 -
Pte10g00820 813 ProSiteProfiles U-box domain profile. 28 107 IPR003613 GO:0004842|GO:0016567
Pte10g00820 813 SMART arm_5 181 221 IPR000225 GO:0005515
Pte10g00820 813 SMART arm_5 138 179 IPR000225 GO:0005515
Pte10g00820 813 SMART arm_5 307 346 IPR000225 GO:0005515
Pte10g00820 813 SMART arm_5 347 392 IPR000225 GO:0005515
Pte10g00820 813 SMART arm_5 717 759 IPR000225 GO:0005515
Pte10g00820 813 SMART arm_5 672 713 IPR000225 GO:0005515
Pte10g00820 813 SMART arm_5 266 306 IPR000225 GO:0005515
Pte10g00820 813 SUPERFAMILY RING/U-box 22 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g00820 Pte-Chr10 10997316 11001350 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g00820 7 814 U-box Gene Family AT1G76390 65.228 0.0 1035
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g00820 - - qsa:O6P43_018783 1332.39