Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g00709 ATGGCAGACGAGCAGCCGACGTCGGTTTCAGGTGGAAGGCGAAGAACCCGAGGAGCCGAAGCAATGGCGCGTTCCAATGCTCTCGAACGCCTGAAAGCTCTAAGGAGTGGCGGTCGCCGATCTGAAAATGGCGGCGCATTTCAAATCAAGATGGAGAAACCTGTTTATGACACTGTCCCAGAAGACGAATATGACGCATTAGTCGCTAAACGTCGTGAAGAAGCCAAAGGGTTTATAGTAGATGACGACGGTTTAGGATATGGAGATGAAGGTGAAGAAGAAGACTGGTCAGTTACTGGTTTGCCTCCATCTTCAGATGAATCCGAAGGGGAAAATGAGAGGCCCAAGAATAGAAAGAAGGTTGAGAAGAAAGACCCACCAGTTAAAAAGCCTCCTCCTTCTTCTCTTTCGGCCGCGTCAATCGGTAATCAAAGGTTGTCGTCTATGTTTACTTCATCGGTGTTCAAGAAAAGTTATAAGGACGATAAAGGCCAAGCATCTTGTGCCGATAGTATCGTTGATGACGTTATAGCTGAATTTGCCCCGGATGATGTTGACAGATTGAAGCGTAGAAGGGGCACACAATCAGTGGCGGGTCTGAACGGTACTGTTACACTAAAAAGTGTTAAGACTGAATGCTTGTCAGATGAGTTTTGTGATTTGATGAGCGGGTCTCTGAACTCTAACTCTGAGGAGATTGTTGTGAATTTTGGTGCTGAATCAAATGGGGTTGTTGATGATTGCAAATTGAGCGAAGAATCAAAGAGAAAAAATGTGATAAGAGAATGCAAAGATGGCAAAGTATTGGATTCTGAGATTAAAAATGCTGATGGGATTTCCAAGGTAGTGCAAAATGTTGTCGAGGCAAAAATGGAAGAGGTTAGTCAGAAAAAAGAGGAGGCTTTTATATTGAATGCTATTATTACAGAAGAAAAAGACCCATCCAAGAGCGCAAGTGCAGGGTGGAAGGAAGTAATGAGTGGAAGTCGAACGAATGGTGCTACTAACAAGGAAGATGGCAATCTCGCAAGTGAGATTACAAATGCAGATTTTGATTTTGATGCGGATGGTTCACTTCCATTTTACATTGTTGATGCCCACGAGGAGCAATATGGAGCTAATAGAGGCATCGTGTATCTATTTGGGAAGGTCAAGACAGGAAACGCATATCAAAGTTGCTGTGTAGTTGTCAAGAATATGCAGAGGTGTGTGTATGCTGTTCCAAGTCGTGGCTCTTCTTACGCAGATGAGGCAATAAAGCTTGAGAAAGAGCTAGAAGAGTCTCAAATTTCTTCCATAGATTTCAGGAAAAGGCTGCAAGATTTGGCATCTGGATTGAAGAATGAGATTGGAAAACAACTATTAAATCTCAATGTTTCAACCTACAGCATGGCTCCTGTTAAGAGGAAATATGCATTTGAGCGATCTGAAATACCTGCGGGTGAGAACTATGTATTGAAAATCACTTACCCGTTTAAGGATCAACCCCTGCCAACAGATCTTAAAGGAGAAAACTTTTGTGCCCTGCTTGGAACTCAATGCAGTGCTTTGGAGCTTCTTCTTATTAAAAGAAAAATAAGAGGACCTTCTTGGATATCAATATCCAAATTTGGAACGTGCAGCCCTCCAGAAAGGGTGAGCTGGTGCAAATTTGAGGTAACCGTTGATTCTCCTAAAGATATTAGGAACTCAACTTCTTCTAAAATCACTGCAGCGATTCCACCAGTTGTTGTAGCTGCAATAAATTTGAAGACTATTCTAAATGGAAAGCAGAACGTGCATGAGATTGTCTCTGCATCCATTGTCTGTTGCCATAGGGCTAAGATTGATACTCCCATGTTGGCTGCAGAGTGGAAGCAGCCTGGAATACTGAGCCATTTTACTGTTGTCCGCAAGCTAGATGGAGGTATATTTCCAATGGGATTCACTAAAGATGTTGTTGAACGGAACAAAAGAGCTGGTTCACCTGTTTTAAGGGAAGAAAGCAGTGAGAGGGCTTTGTTAAATCGTTTGATGGTCGAATTGCATAAGTTAGATAGTGACATTCTTGTTGGGCATAAGATCTCTTCGTTCGATTTGGAAGTCCTTCTCAGCAGATGTCAGGCCTGCAAAGTGCCCAACAGCATGTGGTCTAAAATAGGCCGCCTCAAGCGGTCTATGATGCCTAAACTAGGAAGAGGATTCATGTCCGGTGCAAGTCCTGGGGTTATGTCTTGCATCGCTGGTCGGCTACTTTGTGACACACATACATGTGCGGGCGATCTATTAAAAGAGGTTAGCTACGATCTCACTGAACTTGCAAAGACTCAACTGAACAAAGAACGAAAAGAAATCATGCCACATGATGTTCTCAGAATGTTCCAAACATCAGAAACACTCGTGGAACTTATTGAATGTGGTGAGACTGACGCATGGTTATCGATAGAACTCATGTTCCATCTAAGTATTCTTCCCCTAACGCGTCAGTTGACTAATATTAGTGGCAATCTTTGGGGAAGAACCCTTCAAGGTTCAAGGGCTCAGAGGGTGGAGTTCCTTTTATTGCATGCATTCCATGCAAAGAAATATATGGTGCCAGACAAGTATTCAAATGCAAAAGAAACAAAACTCTCTAAACGCAAAGGAAGTCGAGGTTTTGAAGACGGAATTAATGGGTTGGATGTTGATGATGCAAGCTTATATAATGATGCCTCGGAGAATGACCATGGCAAAGGCAAAAAGGTTCCTGGCTATGCAGGTGGTCTAGTTTTAGAGCCAAAGAAGGGTCTCTATGACAGATATATCCTACTTTTGGACTTCAACAGTCTTTATCCTTCTATAATTCAGGAATATAATATTTGTTTCACGACAGTTGAAAGGTCTTCAGATGGAACAATACCCCGTCTACCATCTAGTCGAACAGTAGGAGTTTTGCCAGAGTTGCTTAGAGATCTGGTTCAAAGAAGGAAAAAGGTGAAGTCATGGATGAAGAATGCATCAGGTATCAAGATGCAACAATTTGACATCCAGCAGCAAGCACTAAAGCTCACTGCAAATAGTATGTATGGATGCCTTGGATTTAATAACTCTAGATTCTATGCAAAGCCATTGGCTGAGCTCATAACACTTCAGGGTAGGGAGATCCTTCAAAGCACTGTTGATCTTGTCCAGAATAATTTGAATTTAGAGGTGATCTATGGTGATACTGATTCAATCATGATATACACTGGTTTAGATGACATTGCAAAAGCGAAAGCAATGGCAGGAAAAGTTATTCAAGAGGTGAACAAGAAATACAAGTGCTTAGAAATTGATCTTGATGGCTTGTACAAGAGAATGCTCATTCTCAAGAAAAAGAAATATGCATCTGTGAAGGAGCAGTTCAGAGATGGGAAATCATATCAGATAATTGAATGTAAAGGTCTAGATATTGTCCGTCGTGATTGGTGTCTACTGTCAAAAGAGCAAGGAGACTTTTGTCTAAACCAAATTTTGTCTGGAGGGTCATGCGATGATGTCGTTGAATCAATACACAGCTCTCTTAGGAAGGTGAAAGAAGAAATTACAAAAGGACAAGTGCCTCTTGAAAAGTATATCATCACAAAGAAGTTGTCAAAACCGCCTGAAGACTATCCTGATGCCAAAAGCCAGCCACATGTCATTGTTGCACAAAGAATGAAGCAAAATGGTTATACAAGTGGTTGCTCAGTTGGTGACACAATTCCTTACATAATTTGTTGTGAACAGGGGGGTAGTTCAGGTGCCTCTCCAGGAATTGCACAACGTGCTAGACATCCTGACGAATTAAAACGAGGAGAGGGGAAATGGATGGTCGACACTGTTTACTACTTGGAACAACAGATTCATCCTGTAGTATCGCGTCTTTGTGCCTTTATTCCGGGTACAAGCTCGGATCGCTTGGCTGATTGCCTGGGGCTCGACTCCTCAAAGTTCCTTCAAAAAGTAAATGAAGCTGCTGGGAGTAACAGCTCAACTGTACTCTTGTCTGCTTCTTCTGGTGATGATGAAAGGTACAAGTGTTGTGAGCCGTTATTCTTCTCTTGTCCTAGCTGCTCTAGCACTTTTGATTGCCCCCCTATCTTCAGTTCCTTGCTAGCATTGATAAACGATAAGCAAACAAGTCCACAAACAGATGAATCTAGCTGCAACTTTTGGCAGAAGTTGCGTTGTCCTAAGTGCCCAGAAGAAGGCAATCTAGGTAGATTATCTCCTGCAATGATTGCCAATCAGGTCAAAAGGCAAGCAGAGAAATTCATTTCGTTGTACTACCGAGGCTTGCTAATGTGTGATGATGAAACGTGTAAGCATACAACTCGCTCTCTCAACCTTCGTGTGCTAGGTGATGCAAAAGGAACTGTTTGTCCAAATTATCCCCGCTGCAACGGACGCCTTCTTAGAAAGTACACAGAAGCAAACTTGTACAAGCAGCTGATGTATTTTTGTCACATACTGGACACCGTTCGCTGCCTAGAAAAGGTTGAAGCGCCCCACAGATTAGCATTAGAGAAAGAATTGACTAAAATTCGACCAATGGTTGAACAAGCTGCATCAACAGTGCAAAGAATTCGTGATCGATGTGCATATGGATGGGTAAAGTTGCAGGATCTGATTATCGCTGTCTGA 4623 0.4235 MADEQPTSVSGGRRRTRGAEAMARSNALERLKALRSGGRRSENGGAFQIKMEKPVYDTVPEDEYDALVAKRREEAKGFIVDDDGLGYGDEGEEEDWSVTGLPPSSDESEGENERPKNRKKVEKKDPPVKKPPPSSLSAASIGNQRLSSMFTSSVFKKSYKDDKGQASCADSIVDDVIAEFAPDDVDRLKRRRGTQSVAGLNGTVTLKSVKTECLSDEFCDLMSGSLNSNSEEIVVNFGAESNGVVDDCKLSEESKRKNVIRECKDGKVLDSEIKNADGISKVVQNVVEAKMEEVSQKKEEAFILNAIITEEKDPSKSASAGWKEVMSGSRTNGATNKEDGNLASEITNADFDFDADGSLPFYIVDAHEEQYGANRGIVYLFGKVKTGNAYQSCCVVVKNMQRCVYAVPSRGSSYADEAIKLEKELEESQISSIDFRKRLQDLASGLKNEIGKQLLNLNVSTYSMAPVKRKYAFERSEIPAGENYVLKITYPFKDQPLPTDLKGENFCALLGTQCSALELLLIKRKIRGPSWISISKFGTCSPPERVSWCKFEVTVDSPKDIRNSTSSKITAAIPPVVVAAINLKTILNGKQNVHEIVSASIVCCHRAKIDTPMLAAEWKQPGILSHFTVVRKLDGGIFPMGFTKDVVERNKRAGSPVLREESSERALLNRLMVELHKLDSDILVGHKISSFDLEVLLSRCQACKVPNSMWSKIGRLKRSMMPKLGRGFMSGASPGVMSCIAGRLLCDTHTCAGDLLKEVSYDLTELAKTQLNKERKEIMPHDVLRMFQTSETLVELIECGETDAWLSIELMFHLSILPLTRQLTNISGNLWGRTLQGSRAQRVEFLLLHAFHAKKYMVPDKYSNAKETKLSKRKGSRGFEDGINGLDVDDASLYNDASENDHGKGKKVPGYAGGLVLEPKKGLYDRYILLLDFNSLYPSIIQEYNICFTTVERSSDGTIPRLPSSRTVGVLPELLRDLVQRRKKVKSWMKNASGIKMQQFDIQQQALKLTANSMYGCLGFNNSRFYAKPLAELITLQGREILQSTVDLVQNNLNLEVIYGDTDSIMIYTGLDDIAKAKAMAGKVIQEVNKKYKCLEIDLDGLYKRMLILKKKKYASVKEQFRDGKSYQIIECKGLDIVRRDWCLLSKEQGDFCLNQILSGGSCDDVVESIHSSLRKVKEEITKGQVPLEKYIITKKLSKPPEDYPDAKSQPHVIVAQRMKQNGYTSGCSVGDTIPYIICCEQGGSSGASPGIAQRARHPDELKRGEGKWMVDTVYYLEQQIHPVVSRLCAFIPGTSSDRLADCLGLDSSKFLQKVNEAAGSNSSTVLLSASSGDDERYKCCEPLFFSCPSCSSTFDCPPIFSSLLALINDKQTSPQTDESSCNFWQKLRCPKCPEEGNLGRLSPAMIANQVKRQAEKFISLYYRGLLMCDDETCKHTTRSLNLRVLGDAKGTVCPNYPRCNGRLLRKYTEANLYKQLMYFCHILDTVRCLEKVEAPHRLALEKELTKIRPMVEQAASTVQRIRDRCAYGWVKLQDLIIAV* 1541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g00709 1540 Gene3D - 1135 1320 IPR042087 -
Pte10g00709 1540 CDD POLBc_alpha 904 1307 IPR045846 GO:0003887|GO:1902975
Pte10g00709 1540 Pfam DNA Polymerase alpha zinc finger 1334 1536 IPR015088 GO:0003887|GO:0006260
Pte10g00709 1540 SUPERFAMILY DNA/RNA polymerases 855 1307 IPR043502 -
Pte10g00709 1540 ProSitePatterns DNA polymerase family B signature. 1059 1067 IPR017964 GO:0000166|GO:0003676
Pte10g00709 1540 FunFam DNA polymerase 574 883 - -
Pte10g00709 1540 Gene3D - 574 880 IPR036397 GO:0003676
Pte10g00709 1540 FunFam DNA polymerase 1135 1321 - -
Pte10g00709 1540 SUPERFAMILY Ribonuclease H-like 356 859 IPR012337 -
Pte10g00709 1540 Pfam DNA polymerase alpha subunit p180 N terminal 28 96 IPR024647 -
Pte10g00709 1540 NCBIfam DNA polymerase (pol2) 55 1289 - -
Pte10g00709 1540 Gene3D DNA Polymerase alpha, zinc finger 1332 1526 IPR038256 -
Pte10g00709 1540 PANTHER DNA POLYMERASE ALPHA CATALYTIC SUBUNIT 19 1538 - -
Pte10g00709 1540 Gene3D Helix hairpin bin 969 1020 - -
Pte10g00709 1540 MobiDBLite consensus disorder prediction 107 129 - -
Pte10g00709 1540 FunFam DNA polymerase 969 1018 - -
Pte10g00709 1540 MobiDBLite consensus disorder prediction 73 142 - -
Pte10g00709 1540 CDD DNA_polB_alpha_exo 574 822 - -
Pte10g00709 1540 Pfam DNA polymerase family B, exonuclease domain 391 765 IPR006133 -
Pte10g00709 1540 Gene3D - 361 560 - -
Pte10g00709 1540 Pfam DNA polymerase family B 830 1290 IPR006134 GO:0000166|GO:0003677
Pte10g00709 1540 Coils Coil 1085 1105 - -
Pte10g00709 1540 PRINTS DNA-directed DNA-polymerase family B signature 928 941 IPR006172 GO:0000166|GO:0003676|GO:0003887
Pte10g00709 1540 PRINTS DNA-directed DNA-polymerase family B signature 1057 1065 IPR006172 GO:0000166|GO:0003676|GO:0003887
Pte10g00709 1540 PRINTS DNA-directed DNA-polymerase family B signature 1004 1016 IPR006172 GO:0000166|GO:0003676|GO:0003887
Pte10g00709 1540 SMART polmehr3 574 1071 IPR006172 GO:0000166|GO:0003676|GO:0003887
Pte10g00709 1540 FunFam DNA polymerase 1331 1526 - -
Pte10g00709 1540 Gene3D - 401 527 - -
Pte10g00709 1540 Gene3D Palm domain of DNA polymerase 911 1115 IPR023211 -
Pte10g00709 1540 MobiDBLite consensus disorder prediction 1 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g00709 Pte-Chr10 7274809 7286095 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g00709 8 1538 Core DNA Replication Machinery Family AT5G67100 59.613 0.0 1791
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g00709 K02320 - jre:109009092 2120.12