Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g00689 ATGCCAGACCAAGAAATTCGAAAGGTGGAAGAGGGTTATGGCTCCCCCTCCCGCCATGGAAGTTCTAGGTTTTGGAGTTCGACTGAGACTGTTATCTTGATACAGAAGGTAATTGCAGAGGCTGTTGGGACCTATTTTCTGATATTTATAGGGTGTGGCTCAGTGGTAGTAAATAAGTCATACGGCGGCTCTGTAACATTCCCAGGTATTTGTGTAGCATGGGGCTTAGTTGTTATGATCCTTGTGTATAGCTTGGGTCACATTTCGGGTGCCCACTTCAACCCAGCTGTGACGGTCACTTTTGCAGTTTTTCGACGATTCCCTATCAAACAGGTACCTTTGTACATCATTGCACAAGTTGGAGGATCTCTTCTTGGTAGTGTCACATTGCGCGTTATCTTTGCAGTGGATAAAGAATCATTCTTTGGAACAGCACCCGCTGAGACTGACATTCAAGCTCTAGTCATTGAGATCATGATCTCATTTCTCTTGATGTTTGTCATTTCAGGGGTTTCCACAGACAGTAGAGCGATTGGAGAATTGGCAGGGATAGCAGTTGGGATGACAATTCTTGTAAATGTCTTGGTTGCAGGACCAGTGACAGGGGCATCCATGAACCCAGCAAGAAGCCTTGGTCCTGCAATTGTGATGAGCATGTACAAAGGAATCTGGGTGTACATAGTTGGACCATTCGTCGGCACCATGCTTGGTGGATTGGCCTATAACCTTCTAAGATTAACTGACAAACCACTGAGGGAGCTAACTAAAAGTAGTTCTTTTCTTAAAAGTAGAAGTGCACATTAA 804 0.4465 MPDQEIRKVEEGYGSPSRHGSSRFWSSTETVILIQKVIAEAVGTYFLIFIGCGSVVVNKSYGGSVTFPGICVAWGLVVMILVYSLGHISGAHFNPAVTVTFAVFRRFPIKQVPLYIIAQVGGSLLGSVTLRVIFAVDKESFFGTAPAETDIQALVIEIMISFLLMFVISGVSTDSRAIGELAGIAVGMTILVNVLVAGPVTGASMNPARSLGPAIVMSMYKGIWVYIVGPFVGTMLGGLAYNLLRLTDKPLRELTKSSSFLKSRSAH* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g00689 267 Gene3D Glycerol uptake facilitator protein. 5 255 IPR023271 -
Pte10g00689 267 CDD MIP 35 244 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte10g00689 267 ProSitePatterns MIP family signature. 92 100 IPR022357 -
Pte10g00689 267 Pfam Major intrinsic protein 30 241 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte10g00689 267 SUPERFAMILY Aquaporin-like 31 254 IPR023271 -
Pte10g00689 267 PRINTS Major intrinsic protein family signature 35 54 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte10g00689 267 PRINTS Major intrinsic protein family signature 224 244 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte10g00689 267 PRINTS Major intrinsic protein family signature 74 98 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte10g00689 267 PRINTS Major intrinsic protein family signature 156 174 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte10g00689 267 PRINTS Major intrinsic protein family signature 111 130 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte10g00689 267 PRINTS Major intrinsic protein family signature 187 209 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte10g00689 267 NCBIfam MIP family channel protein 39 241 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte10g00689 267 MobiDBLite consensus disorder prediction 1 23 - -
Pte10g00689 267 PANTHER AQUAPORIN NIP2-1 26 262 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g00689 Pte-Chr10 7000450 7002021 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g00689 3 263 Major Intrinsic Protein MIP AT5G37820 69.466 2.84e-130 370
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g00689 K09874 - cave:132179785 374.4