Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g00682 ATGGGGGATCACTTTGTGTTGCTGGTTGACCGTATGCTAACAGAGTCCACATTGGAAGCTGCAATTGAAAGCCGAAATCGCTCTTTGCAAGCCACGACCTCAGCAGTGGACGATTCTAATGTTGACGACTCTTCTGTCATGTTGTGTATAGAAGACCAAAAACCTTCAGGAAAATTAGGGGAATGTAGGATATGTCAAGATGAAGACGAAGTTTCGAATATGGAGGCACCTTGCTCATGTTGTGGCAGTTTGAAGTATGCTCACCGCAGATGTGTACAGCGGTGGTGCAATGAGAAGGGCAACACCGTTTGTGAGATATGCCACCAGGATTTCAAACCTGGTTATACAGCTCCTCCTCCATTATTTCAATTTGGGCGTATTCCAATGAGTTTCAGGGGGGACTGGGAAATTTCTCGAAGAGACTTGAATAGCCCTCAGTTGGCAGGAATGGTTGCAACAGGCCGCAGTATCATAGCTTCTGATTATGATGAGTATTCAGTTTCAAGTGCAGGAAATGTTCTTTGCTGTCGTTCTGTTGCTATCATTTTCATGGTTCTCCTGGTTTTAAGACACACACTTCCTCTGATAATTAGTGGAAACAATGATTACTCTATCCCACTCTTCATGTTGTTGCTTTTCCGAACTGTTGGGATTGTGGTGCCCATTTACTTCATTTCAAGAGCTTTTACTTCTATCCAACGACGTCGACAGCAGAGAGAGCCTCCTGACTTCTCAGTCGATTCAGATGATGAAGAAACCGAAAGTTCTGCCTAG 774 0.4432 MGDHFVLLVDRMLTESTLEAAIESRNRSLQATTSAVDDSNVDDSSVMLCIEDQKPSGKLGECRICQDEDEVSNMEAPCSCCGSLKYAHRRCVQRWCNEKGNTVCEICHQDFKPGYTAPPPLFQFGRIPMSFRGDWEISRRDLNSPQLAGMVATGRSIIASDYDEYSVSSAGNVLCCRSVAIIFMVLLVLRHTLPLIISGNNDYSIPLFMLLLFRTVGIVVPIYFISRAFTSIQRRRQQREPPDFSVDSDDEETESSA* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g00682 257 FunFam Zinc finger family protein 50 117 - -
Pte10g00682 257 MobiDBLite consensus disorder prediction 236 257 - -
Pte10g00682 257 ProSiteProfiles Zinc finger RING-CH-type profile. 54 114 IPR011016 GO:0008270
Pte10g00682 257 CDD RING_CH-C4HC3_MARCH 62 108 - -
Pte10g00682 257 Pfam Protein of unknown function (DUF3675) 113 228 IPR022143 -
Pte10g00682 257 SUPERFAMILY RING/U-box 61 112 - -
Pte10g00682 257 Pfam RING-variant domain 62 107 IPR011016 GO:0008270
Pte10g00682 257 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 58 113 IPR013083 -
Pte10g00682 257 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 239 IPR033275 -
Pte10g00682 257 SMART ringv_2 61 108 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g00682 Pte-Chr10 6855168 6857676 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g00682 61 107 C3H Transcription Factor Family AT5G05830 37.736 2.00e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g00682 - - vun:114190540 361.688